RNA id: TCONS_00008485


Basic Information

Item Value
RNA id TCONS_00008485
length 2559
lncRNA type inter_gene
GC content 0.40
exon number 8
gene id XLOC_004271
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36620717 ~ 36627322 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAGTTTCTCACCATGGACGGGCTCGACGACGTTGCGATTTCCACTCTAAAAgCTGCTAACATTGGGGAAGACATTTTGCCATCTCTCTCGCGAGAGGATATCCGAGATCTCTTTCCTGGTCCTGAGCACTTCCTGCGGCGCAAAGCCATTTGGCGTTTGACTCATAAGGAAGAACAGgAGCACATCATTCCTGTTGAAGGTTCATCAGCAGATGATAAACATACTGAAAGTTCAAAACAAGATGACCCCAGTACATCAAAGTTTTTAAAGTTACCCAGTCCAGAATATGTTCTCTTCACTGACAGTGAACTACAACAGATGAGACGCACATACTTTGAGCAGCAGCGTCTTGGAAAAGAGGGTGACGTCACCTTATCGAAAGAGCTATTCTGCCGGCTCATCCGAAATACCATGACAAACATGGTATCAATAGCAAGagcatcttctgatgactacaaATATCCCACTAAACATGAAGTTATTGCCATGGCAAAACGGTTAGTGGAATACTACCCTATGATAAAAGATAAGTCAACTGGATCTAGGCACGAGTGGGACACTGTTGCTAAAAAGCTCCTGAAGCGACTTTCAAATATCCGAAGTCCCATGAAGGCCAAACAGCCTCCTTTCAAAAGAGCACATCAGGACAAAGAACTTTCTGCTGCTGTGACAAGTGACTATGATGCTGATTCCAGTGCTTCAACAGTCATTCTGTCATCACCTTCAAGTTCAAGCACCCCACGGCAAGAAAATGACAGCATTGATGAAGCATCTGATGGTCCTGACAACAGCCTTGACAGCCAGAAAACCCAGGCAAGACATTACAGGACGCTCCAAGAAATGTACAAAGCAAAGAAGCCAAATAaagctgctgtaacccatctatTAGACCTGGAGTTCCAGTCCAGAAGAAGTTTCATTGACTCAAATGTATTGAAGGAGCAAGACAAACCCACAAATATTTTGCAAGCGTACCCCTGCTTCAAAGAATTGGACCATgCAATGGATGAACTACGAAGAATCATTGAGCCAAACAACTCCAAATACATTTCTGAGGTAAAGGACAGGTGGGAGACCTTCTACTCCAAGGTTCAGTTTTATGGAGTGATGAAAAAAGTCATGAAGCCTCCAAGGACATTAAATGGAGTTGAACATGCCATTGCTGTTTTTACTGCCCTACCGCTGCTCTTCCCATCTGGGTCTGCAGCACCGAAGAAACAGGTCCCAATCAGTGAGGCTCTTTTCCATGTTCTGACGCCCTCAGAGGATCCGGATACCTACATCCACAGGCGTGCATTTTCCAGTCCGGTCTTGCTGGTTGGTGAGGAGAACTGCATGGTGGTTGTAGGTACAACCCCAGTTCTAACATTTGACAAAGACTTGCTCTATGAGGGGCCTCTCTACCTCCTGGCCTATTACTATGCATTTAATCTCACATATCCAAAGTGTCTTGCAACCCTCTTGTCTGTGTTGCAAACACAAGTTCTGAGAGATGTCATCCACGAGCAGGATGAAACCCCCTCGTACAAAAAGGCCATTCATGAATGGAGAATGTTTGTTGACTAATTGCTGTTTCAAGCTGCTGTGGCTGAGAGacagctgcatttttttttcggcCATTACATTTGCACTTGATTTGTGCTGTTAGGAGTTTTTCCCCATTTTCAGTATATTAAATGTATCTAACATACAATAATGCAGCACAGCAAAACAAAAAGTAATTGTTGTGTGTAACTTTACaggacattttttgttattattattaatgttggaCTGTTCATCCTGTTTTGCTGTACCCCAGTTGTTTAAGaggaaaatgttcatttttgaatctgccattCATTCAAGCCATTGTTGACCCAAACTTCAATTACTTCTTAATCTTATGTTGTTTCAACCTTGGATTTATCTACAGAAGATATTATTTAGAATGTTGGTAACTGTTGATGGtagctattgactttcatagtatttttttaatttattttgtatatttttcttgctATGATAGCTACCGACATTTTTCAAAGTGTCATCTTCTgcaaagaaactcatacaggatTTGAAGAACATAAGGGTGAGCAtgataattatttgatttttggGTTACTATTCTGTTACATAGTGAATTGATCCAGGCTGTTTGAAGCTTAAATGCTGTTTGAGTTTGTGTAGACTGAGGCAAAGCATTTTGCATAGAATACTTGCGGTTTCTGTGCcaggtattttatttcattttaaagtgtaAGCTTGTCTTTGCTTATCCTGCCTTATGCTCCATTTGTTCAGAACTTTGGAGAATGTTCTTTAATAAATGTTCAGCAAAGCTGGAAGTTGTTTCTTCACTTAAGTGGGGGAAGGTGTGGGAGGTATTTTCTTTTAAgagttttcatctcattttagGTTTTTTTGTGATcttaaaaaaagtctaaatagGCTGGATTTAAGGTAAAATATTCTACTTTCAATGTATTTTCTCCCCCTAAAATTATTATTGTCGTGCTTCAAAAAAGAGAAAACTGTTTAATTTTAAGCttgtttgtctagttttaagaact

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090036 regulation of protein kinase C signaling biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008842 lncRNA downstream 51726 36568924 ~ 36569266 (-) True XLOC_004270
TCONS_00008152 lncRNA downstream 329310 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008839 lncRNA downstream 374236 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008124 lncRNA downstream 879548 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008486 lncRNA upstream 329098 36956420 ~ 36964002 (-) True XLOC_004273
TCONS_00008168 lncRNA upstream 382839 37010161 ~ 37014671 (-) False XLOC_004274
TCONS_00008169 lncRNA upstream 382839 37010161 ~ 37014748 (-) False XLOC_004274
TCONS_00008170 lncRNA upstream 384114 37011436 ~ 37015507 (-) False XLOC_004274
TCONS_00008844 lncRNA upstream 385751 37013073 ~ 37014727 (-) True XLOC_004274
TCONS_00008159 mRNA downstream 145868 36452294 ~ 36475124 (-) False XLOC_004268
TCONS_00008158 mRNA downstream 146554 36449698 ~ 36474438 (-) False XLOC_004268
TCONS_00008160 mRNA downstream 146686 36452516 ~ 36474306 (-) True XLOC_004268
TCONS_00008156 mRNA downstream 170222 36422233 ~ 36450770 (-) False XLOC_004268
TCONS_00008157 mRNA downstream 174337 36422315 ~ 36446655 (-) False XLOC_004268
TCONS_00008164 mRNA upstream 61472 36688794 ~ 36765834 (-) False XLOC_004272
TCONS_00008165 mRNA upstream 64479 36691801 ~ 36765376 (-) True XLOC_004272
TCONS_00008166 mRNA upstream 166151 36793473 ~ 36957127 (-) False XLOC_004273
TCONS_00008167 mRNA upstream 166228 36793550 ~ 36963988 (-) False XLOC_004273
TCONS_00008172 mRNA upstream 478318 37105640 ~ 37120954 (-) True XLOC_004277
TCONS_00008119 other downstream 1395853 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 2154479 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 2265330 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2654720 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 3249625 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 672049 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1547749 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2320665 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2462553 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3555359 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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