RNA id: TCONS_00008169


Basic Information

Item Value
RNA id TCONS_00008169
length 1867
lncRNA type antisense
GC content 0.37
exon number 4
gene id XLOC_004274
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37010161 ~ 37015507 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGATTGCAACGGACACTAGCCAATCAGAGGCAGGTCTTCGCGGAATGCGAGTAGGAAAAGTAAACAAGCTTCTCTTTGGTGGCAGCGGCATGGGTCGCAGTCCTCGTGGACGGTCTCCGACTCGCCTTATCAGAGTTTAAAACGTAAAGATAAATGTTGAATTCCAGCGCATAACAACCATCCCACTTGAAACAACCTTTATGGCTCAGTTGGACAGCCATTTACCCTAGCTAACATCTATTTTCATCAAAAAGGAAGGTGTTTCTGGCCAAAAACTAGCCAAACATCTGGCGATCTTGCAAGagGCTACAAGTGACATCAATCTTAAATGGGCAGCAGTCCTCAAGGCACTTTGCATCTATCTTGGTGAGGATGATGAACATCTCATTCAGGAGTATAAGGACATTGAAGGAGATGGCATCCAGAGAGACCTGCAGAATTCCACCATGGGCGTATATGTCATCAACAAGGAGGGTGGAGAAATTGGAGCACATGATGACATTTATGTTGAAGGAGAAATCATTCTGGACAACATTGGATCTGTAGCCCAAGCATCTGCAATGATGCTGGGAGTCATCTATGTATTGAACTTGGCCTACCCCAAAGAGCTGAAATACTCTTATGAATTCATTCAAAATGTGCTCTTGAAAATGGATGGAGAAAGACTTTCCCCCCAAAGTCCTTGGACTAAAGAACAAAATCATTGCTGGACTGTAGGATTTCTTCAGCCACTCATGTAAACGCTGCTAAGCTGCATTTTTAAATCTGGTTTGGGAGGCGATAGAAAACATATAGTATGATGTAAAATGCAACCCTAGAAAATgtttcaaactgaaaacaaagtGAGTGGTGGACTGTAATACATAGCCACTGGTGTGAACATTTAAAGTTGTCATTGGATTTAGTCGAATATTCACCTGAAATAAAAATTGCAATCCTGTAAATAGGCCAGGTTTCTATCCACACTCAGCACAAaaagtatccatccatccattaacgCCATATGAATATTAGAAGTTAAGCGCTTTGAGATAAACAGTTGATGATGTCTGCACCATTATGGCATTGCATAAGAAGAGGACACAATGAGATGACGTCATTAAAAGAGCTCCAGTCAAAGTTCAAACAATGGAGAACCATGTGTAAAACAAGAAATTATGACAATTCTTGTTAGTTTCATGTGAGAATGTTACAGCCTCCTCATTGCTTCACACAGATGTGATGTTTTCATTtgacactatttttattttttttagattagctTAAGCTTCAGTTGACATTTAAGTCacgtttcattttatttagtaagTCTGTTTCCATATTTATACACCAACTTTTTCACCTCAGCCAaacataaaatcttttttttaattagtattttttgaaTGTAACTACAGTTTTTTGTAATTTCAGCATCAGGTCCTCAGTGTGCACTGTGTTGCAGCTGTGGACAGTtcttatattatagtattttttgttctgtATAGTACTGGTGTATTTTGTTACTTGTATATGTTTTGTTGTGTGTTAAAAGGCTTCCCTCCAAAGTTCtcctgtgtgtatatgtatacagcCACTATTGTGAATATTTAAAGCTGCACTAATGATGTTTTGGAATATTGACTCAATGTAAGTTTGCAGTTAAATATAATCTCACGCAAGTTATTCAGTGTTCGCTGTCTTCCAGCTAATCTGGTGCACTTGTTTTGTTACGAATGGTACAATGTATTTTATGTTAATGGATGATATACTGCATTTTGTTATAAGAAAACAATTTGAGAAATGATTACTGAGTTTCATTACTGCCATTCTTTAAGAGAGCAAAAATATCTCTTGGAtcacaaaaataaagttaaagttgAAAATA

Function

GO:

id name namespace
GO:0099041 vesicle tethering to Golgi biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000172997

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008486 lncRNA downstream 46159 36956420 ~ 36964002 (-) True XLOC_004273
TCONS_00008843 lncRNA downstream 323006 36582452 ~ 36687155 (-) True XLOC_004269
TCONS_00008171 lncRNA upstream 23672 37038420 ~ 37044539 (-) False XLOC_004275
TCONS_00008845 lncRNA upstream 25628 37040376 ~ 37043920 (-) True XLOC_004275
TCONS_00008846 lncRNA upstream 70872 37085620 ~ 37095534 (-) True XLOC_004276
TCONS_00008173 lncRNA upstream 282753 37297501 ~ 37298097 (-) True XLOC_004278
TCONS_00008847 lncRNA upstream 460765 37475513 ~ 37476968 (-) True XLOC_004282
TCONS_00008167 mRNA downstream 46173 36793550 ~ 36963988 (-) False XLOC_004273
TCONS_00008166 mRNA downstream 53034 36793473 ~ 36957127 (-) False XLOC_004273
TCONS_00008164 mRNA downstream 244327 36688794 ~ 36765834 (-) False XLOC_004272
TCONS_00008165 mRNA downstream 244785 36691801 ~ 36765376 (-) True XLOC_004272
TCONS_00008160 mRNA downstream 535855 36452516 ~ 36474306 (-) True XLOC_004268
TCONS_00008172 mRNA upstream 90892 37105640 ~ 37120954 (-) True XLOC_004277
TCONS_00008175 mRNA upstream 296133 37310881 ~ 37359416 (-) False XLOC_004280
TCONS_00008176 mRNA upstream 296133 37310881 ~ 37411492 (-) False XLOC_004280
TCONS_00008177 mRNA upstream 298760 37313508 ~ 37425407 (-) True XLOC_004280
TCONS_00008178 mRNA upstream 416945 37431693 ~ 37509001 (-) False XLOC_004281
TCONS_00008119 other downstream 1785022 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 2543648 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 2654499 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 3043889 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 3638794 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 284623 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1160323 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 1933239 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2075127 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3167933 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

//