RNA id: TCONS_00008845


Basic Information

Item Value
RNA id TCONS_00008845
length 498
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id XLOC_004275
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37038420 ~ 37044539 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttaataagcTCAAAGGTTGGTTGAAGTTTTTACTGATACCCTTGTGTTGCCTTTAGTTTTTGGTTTGTTCTTCACGGGGGTTTTTGAAGGTGTGGGTGCAATTTTTGGTTTGCCAGCACACACTAAAAGATGTAAGGGTGGACCGTACCAATGGAAAGATGTCTTCTGGGGTTACTGTATGGCTTTTGTTGTGACCTTTCTTTATCTGAGCTCCTATCACGGTACAGTATGCAGACTTCACAAAATCAAAATTCTGCGCTACCATCACaggaaattttttttaagttgaatctaTTTAACTATGTTACTGTTTAACAGTATGTTAGACTATTAAAGGCAAGGCACAGCAGgcaattaaaaacacatttaagtaTTTCTTTTATGGCactttgtgtctgtagatttcaattacaatacatattttaaaggtTATTTTCTAATatgcattttgtttgtctacTGAACTTACAGCTACAAATTTTCACTTCAGAAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008170 lncRNA downstream 24869 37011436 ~ 37015507 (-) False XLOC_004274
TCONS_00008169 lncRNA downstream 25628 37010161 ~ 37014748 (-) False XLOC_004274
TCONS_00008844 lncRNA downstream 25649 37013073 ~ 37014727 (-) True XLOC_004274
TCONS_00008168 lncRNA downstream 25705 37010161 ~ 37014671 (-) False XLOC_004274
TCONS_00008486 lncRNA downstream 76374 36956420 ~ 36964002 (-) True XLOC_004273
TCONS_00008846 lncRNA upstream 41700 37085620 ~ 37095534 (-) True XLOC_004276
TCONS_00008173 lncRNA upstream 253581 37297501 ~ 37298097 (-) True XLOC_004278
TCONS_00008847 lncRNA upstream 431593 37475513 ~ 37476968 (-) True XLOC_004282
TCONS_00008487 lncRNA upstream 549088 37593008 ~ 37603964 (-) False XLOC_004283
TCONS_00008848 lncRNA upstream 557084 37601004 ~ 37603955 (-) False XLOC_004283
TCONS_00008167 mRNA downstream 76388 36793550 ~ 36963988 (-) False XLOC_004273
TCONS_00008166 mRNA downstream 83249 36793473 ~ 36957127 (-) False XLOC_004273
TCONS_00008164 mRNA downstream 274542 36688794 ~ 36765834 (-) False XLOC_004272
TCONS_00008165 mRNA downstream 275000 36691801 ~ 36765376 (-) True XLOC_004272
TCONS_00008160 mRNA downstream 566070 36452516 ~ 36474306 (-) True XLOC_004268
TCONS_00008172 mRNA upstream 61720 37105640 ~ 37120954 (-) True XLOC_004277
TCONS_00008175 mRNA upstream 266961 37310881 ~ 37359416 (-) False XLOC_004280
TCONS_00008176 mRNA upstream 266961 37310881 ~ 37411492 (-) False XLOC_004280
TCONS_00008177 mRNA upstream 269588 37313508 ~ 37425407 (-) True XLOC_004280
TCONS_00008178 mRNA upstream 387773 37431693 ~ 37509001 (-) False XLOC_004281
TCONS_00008119 other downstream 1815237 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 2573863 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 2684714 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 3074104 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 3669009 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 255451 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1131151 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 1904067 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2045955 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3138761 40182681 ~ 40182796 (-) True XLOC_004319