RNA id: TCONS_00008173


Basic Information

Item Value
RNA id TCONS_00008173
length 597
lncRNA type antisense
GC content 0.39
exon number 1
gene id XLOC_004278
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37297501 ~ 37298097 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttaagatatttattgttattatttatgtgactttttttttgggACTGTAAGATTTGTACATGATATATTAGTTCTTTTTATTTCTGTACAGCAGTGCAAACACTTCCAATGTGTGTGTCCGCATGCTGAATGACTCTGTGTGTACGTGTGCATCACGGAGGACAAGCGTTGACATTATGATGGTGTGTACTGTGTTTTGAGTATATGATGTGTCCTCGCCCACATCTTCCTGCCCACTGCCagtggattttatttatttatttatttattttgcccgTGCAACTAAATGAAAAGCGTTTGCATGTTTTGGGTGTGCAGATCTGAGACGCTAAGAGTGTGGGATATGCTTGCATGACTGTGTCTGTGTATGCAAACAGGATTGTTTCAGGGTGTGAAtgctgtgtgtatgagtgtgtgtgtgtgtgttgcagaaaAAGTCGACTGGGGTGTTCGGTGTGAAATCTGTGTCATGTTCGATGTTTTTAAACCCTCGAACTCCCTGATATTTGCTATTGTATGTGTTGTAACCCCCAACTATTCTTGAGTGTCAGTCGGCTTGTTTATATCATTAAATAAAAGTGACTTTCTTTCAGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0043010 camera-type eye development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0098657 import into cell biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0048880 sensory system development biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0003008 system process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0044297 cell body cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0150034 distal axon cellular_component
GO:0098793 presynapse cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000173033

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008846 lncRNA downstream 201967 37085620 ~ 37095534 (-) True XLOC_004276
TCONS_00008171 lncRNA downstream 252962 37038420 ~ 37044539 (-) False XLOC_004275
TCONS_00008845 lncRNA downstream 253581 37040376 ~ 37043920 (-) True XLOC_004275
TCONS_00008170 lncRNA downstream 281994 37011436 ~ 37015507 (-) False XLOC_004274
TCONS_00008169 lncRNA downstream 282753 37010161 ~ 37014748 (-) False XLOC_004274
TCONS_00008847 lncRNA upstream 177416 37475513 ~ 37476968 (-) True XLOC_004282
TCONS_00008487 lncRNA upstream 294911 37593008 ~ 37603964 (-) False XLOC_004283
TCONS_00008848 lncRNA upstream 302907 37601004 ~ 37603955 (-) False XLOC_004283
TCONS_00008849 lncRNA upstream 302907 37601004 ~ 37603961 (-) False XLOC_004283
TCONS_00008181 lncRNA upstream 302907 37601004 ~ 37603981 (-) True XLOC_004283
TCONS_00008172 mRNA downstream 176547 37105640 ~ 37120954 (-) True XLOC_004277
TCONS_00008167 mRNA downstream 333513 36793550 ~ 36963988 (-) False XLOC_004273
TCONS_00008166 mRNA downstream 340374 36793473 ~ 36957127 (-) False XLOC_004273
TCONS_00008164 mRNA downstream 531667 36688794 ~ 36765834 (-) False XLOC_004272
TCONS_00008165 mRNA downstream 532125 36691801 ~ 36765376 (-) True XLOC_004272
TCONS_00008175 mRNA upstream 12784 37310881 ~ 37359416 (-) False XLOC_004280
TCONS_00008176 mRNA upstream 12784 37310881 ~ 37411492 (-) False XLOC_004280
TCONS_00008177 mRNA upstream 15411 37313508 ~ 37425407 (-) True XLOC_004280
TCONS_00008178 mRNA upstream 133596 37431693 ~ 37509001 (-) False XLOC_004281
TCONS_00008179 mRNA upstream 141590 37439687 ~ 37548711 (-) False XLOC_004281
TCONS_00008119 other downstream 2072362 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 2830988 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 2941839 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 3331229 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 3926134 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 1274 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 876974 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 1649890 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 1791778 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 2884584 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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