RNA id: TCONS_00008184


Basic Information

Item Value
RNA id TCONS_00008184
length 1650
lncRNA type retained_intron
GC content 0.41
exon number 3
gene id XLOC_004285
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37683278 ~ 37693019 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACGCAGAACTGACGCCGAGACTGTGGAAGCACGTGAACCTGCTGAGGTGCCATCTAATAACTCTTTCTGCCCTCAAGGaaatgcagtttcatcagcaCTGATAAAGAGCTTTGAATTCATATCAGGGTGGAGGTTTTCTTCATTTGCAATGCCGATAAGTGACATGCGGCAAGACGGCAATGGTCTCGACACAATGGGCGAGATTGACAGTAATGGCAGCTGTGATAGCGTGGTCAGCTTCAACTCATGCTTTAGTGATGAAAGTCTAGAGTATCTTTCCGCTGAGGAGAAGGCTTGTCTCATGTACCTAGAGGAGACTATTCAGTCATTGGATACAGAGGATGACAGTGGCTTGTCTAATGACGAATCCCTTCAGCTGCCAGCACGAGGAAATGTAGCTAACAAAGCAGCCCACATCTCTGCATCAATAAAACTCAACAAGCTCCCTAGTCAAGGTGTGCTGGAGCTCCTTTACTATTTCTAGCTCTTATCTATTGCTAATAGGTACGTAAATCCTAAGAGGTCATGCgttattatatttttcaagatcATGACTTAATGTTTTATCATTATCTCCTACAGACTGAACTGCTGCTGTAGGAAAACACTTGCGCTGCCTCTTCATTATAAACAATCATTAAGTTACATGCGAAAGATTCTGGCTGCTATCATACACCCTGCGCAATAAGACGCCAGACGTGTTTGGCACGATTTGTGGCTATTTTCAGACCATCGCAAACCTAACTTTCATGTTTGCACCAcactatttaaatagcaaatcaatttgCACCTCTttatggactcatgggtgtgctggtctaaaatagaggtgtgttgaggcgcattgttggtgcgttgctattttgaagaactgaaatagactgcgccattgaccgtCTAAAAGCAGGTCGAAAatcgttagttatgcacctacgTGGGCTCAACCCATAAgaacagcatgtgtatttggatataactcagttttttgaccacacttctttattattgtttatttattcgtttgctggaaattagaactgaatttagaaatagctttgaaacaaatctttgcgtttaacaaacgaaattaaatatgtaggctaatggatgtctttagtggacaACAACGTTTCCTTATTCATGAAAGGAAAGGAgtaaagagtgaaagtaaagaggctgaatgggggaggcttgttctttatccttgcgctgcagatggtctgtttaactgttttctcactagtgtagcgttttccacttacaaagtccaccatgtagatagcaaatgtgctatggcatgacgcaactgactcttaaatggAAATctgagatgagactgattggtttaatgcaggttatgcttaaaacacacccataattcattaagagcataagcacaacccttttagaccatgcgccgtggcgcagagtgtatttttccatgcttaaaacagcaaaagtggacTCGAACATGCTTTTAATGCTTCTGCGCCacgcgctttagactttgcgcctagatcgttaaaataaaaCCCTCTTTTTTAAAGGCAGGAACGTAGCCTACATCTGAAAATTTTTGGTAGCCGGTCATACATTGGGcaggtataaataaataataattaatgcataaatcaataaaaacaaaaaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2272 Orthologous to human C1orf116 (chromosome 1 open reading frame 116).

Ensembl:

ensembl_id ENSDART00000161564

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008488 lncRNA downstream 73105 37613547 ~ 37614538 (-) True XLOC_004284
TCONS_00008181 lncRNA downstream 83662 37601004 ~ 37603981 (-) True XLOC_004283
TCONS_00008487 lncRNA downstream 83679 37593008 ~ 37603964 (-) False XLOC_004283
TCONS_00008849 lncRNA downstream 83682 37601004 ~ 37603961 (-) False XLOC_004283
TCONS_00008848 lncRNA downstream 83688 37601004 ~ 37603955 (-) False XLOC_004283
TCONS_00008850 lncRNA upstream 87874 37780578 ~ 37827473 (-) False XLOC_004287
TCONS_00008851 lncRNA upstream 111076 37803780 ~ 37827473 (-) True XLOC_004287
TCONS_00008852 lncRNA upstream 292247 37984951 ~ 37987558 (-) True XLOC_004290
TCONS_00008192 lncRNA upstream 347260 38039964 ~ 38041422 (-) True XLOC_004292
TCONS_00008853 lncRNA upstream 392168 38084872 ~ 38087013 (-) True XLOC_004293
TCONS_00008180 mRNA downstream 98350 37509102 ~ 37589293 (-) True XLOC_004281
TCONS_00008179 mRNA downstream 138932 37439687 ~ 37548711 (-) False XLOC_004281
TCONS_00008178 mRNA downstream 178642 37431693 ~ 37509001 (-) False XLOC_004281
TCONS_00008177 mRNA downstream 262236 37313508 ~ 37425407 (-) True XLOC_004280
TCONS_00008176 mRNA downstream 276151 37310881 ~ 37411492 (-) False XLOC_004280
TCONS_00008185 mRNA upstream 15680 37708384 ~ 37717709 (-) False XLOC_004286
TCONS_00008186 mRNA upstream 16137 37708841 ~ 37720024 (-) False XLOC_004286
TCONS_00008187 mRNA upstream 24852 37717556 ~ 37720266 (-) True XLOC_004286
TCONS_00008188 mRNA upstream 156001 37848705 ~ 37880492 (-) True XLOC_004288
TCONS_00008189 mRNA upstream 256135 37948839 ~ 37997419 (-) False XLOC_004289
TCONS_00008174 other downstream 388158 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 2462504 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 3221130 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 3331981 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 3721371 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008194 other upstream 482367 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 1255283 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 1397171 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 2489977 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 2985509 40678213 ~ 40696136 (-) True XLOC_004327

Expression Profile

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