Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008185 |
| length | 3827 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 2 |
| gene id | XLOC_004286 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 37708384 ~ 37720266 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030968 | endoplasmic reticulum unfolded protein response | biological_process |
| GO:0035523 | protein K29-linked deubiquitination | biological_process |
| GO:0070536 | protein K63-linked deubiquitination | biological_process |
| GO:0030433 | ubiquitin-dependent ERAD pathway | biological_process |
| GO:0006986 | response to unfolded protein | biological_process |
| GO:0071108 | protein K48-linked deubiquitination | biological_process |
| GO:1990167 | protein K27-linked deubiquitination | biological_process |
| GO:1990168 | protein K33-linked deubiquitination | biological_process |
| GO:0035871 | protein K11-linked deubiquitination | biological_process |
| GO:0016236 | macroautophagy | biological_process |
| GO:0016579 | protein deubiquitination | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity | molecular_function |
| GO:0101005 | ubiquitinyl hydrolase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008234 | cysteine-type peptidase activity | molecular_function |
| id | description |
|---|---|
| ko04141 | Protein processing in endoplasmic reticulum |
| ko01002 | Peptidases and inhibitors |
| id | description |
|---|---|
| ZDB-GENE-050417-217 | Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in several processes, including endoplasmic reticulum unfolded protein response; protein deubiquitination; and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within proteolysis and response to unfolded protein. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human YOD1 (YOD1 deubiquitinase). |
| ensembl_id | ENSDART00000177280 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008184 | lncRNA | downstream | 15680 | 37687643 ~ 37692704 (-) | True | XLOC_004285 |
| TCONS_00008488 | lncRNA | downstream | 93846 | 37613547 ~ 37614538 (-) | True | XLOC_004284 |
| TCONS_00008181 | lncRNA | downstream | 104403 | 37601004 ~ 37603981 (-) | True | XLOC_004283 |
| TCONS_00008487 | lncRNA | downstream | 104420 | 37593008 ~ 37603964 (-) | False | XLOC_004283 |
| TCONS_00008850 | lncRNA | upstream | 62869 | 37780578 ~ 37827473 (-) | False | XLOC_004287 |
| TCONS_00008851 | lncRNA | upstream | 86071 | 37803780 ~ 37827473 (-) | True | XLOC_004287 |
| TCONS_00008852 | lncRNA | upstream | 267242 | 37984951 ~ 37987558 (-) | True | XLOC_004290 |
| TCONS_00008192 | lncRNA | upstream | 322255 | 38039964 ~ 38041422 (-) | True | XLOC_004292 |
| TCONS_00008853 | lncRNA | upstream | 367163 | 38084872 ~ 38087013 (-) | True | XLOC_004293 |
| TCONS_00008182 | mRNA | downstream | 15365 | 37683278 ~ 37693019 (-) | False | XLOC_004285 |
| TCONS_00008183 | mRNA | downstream | 16935 | 37685593 ~ 37691449 (-) | False | XLOC_004285 |
| TCONS_00008180 | mRNA | downstream | 119091 | 37509102 ~ 37589293 (-) | True | XLOC_004281 |
| TCONS_00008179 | mRNA | downstream | 159673 | 37439687 ~ 37548711 (-) | False | XLOC_004281 |
| TCONS_00008178 | mRNA | downstream | 199383 | 37431693 ~ 37509001 (-) | False | XLOC_004281 |
| TCONS_00008188 | mRNA | upstream | 130996 | 37848705 ~ 37880492 (-) | True | XLOC_004288 |
| TCONS_00008189 | mRNA | upstream | 231130 | 37948839 ~ 37997419 (-) | False | XLOC_004289 |
| TCONS_00008190 | mRNA | upstream | 232214 | 37949923 ~ 37995501 (-) | True | XLOC_004289 |
| TCONS_00008191 | mRNA | upstream | 315406 | 38033115 ~ 38083397 (-) | False | XLOC_004291 |
| TCONS_00008193 | mRNA | upstream | 332912 | 38050621 ~ 38083473 (-) | True | XLOC_004291 |
| TCONS_00008174 | other | downstream | 408899 | 37299371 ~ 37299485 (-) | True | XLOC_004279 |
| TCONS_00008119 | other | downstream | 2483245 | 35225022 ~ 35225139 (-) | True | XLOC_004254 |
| TCONS_00008105 | other | downstream | 3241871 | 34466395 ~ 34466513 (-) | True | XLOC_004247 |
| TCONS_00008102 | other | downstream | 3352722 | 34355544 ~ 34355662 (-) | True | XLOC_004245 |
| TCONS_00008088 | other | downstream | 3742112 | 33966158 ~ 33966272 (-) | True | XLOC_004234 |
| TCONS_00008194 | other | upstream | 457362 | 38175071 ~ 38175150 (-) | True | XLOC_004294 |
| TCONS_00008207 | other | upstream | 1230278 | 38947987 ~ 38949751 (-) | True | XLOC_004305 |
| TCONS_00008210 | other | upstream | 1372166 | 39089875 ~ 39089991 (-) | True | XLOC_004308 |
| TCONS_00008222 | other | upstream | 2464972 | 40182681 ~ 40182796 (-) | True | XLOC_004319 |
| TCONS_00008236 | other | upstream | 2960504 | 40678213 ~ 40696136 (-) | True | XLOC_004327 |
