RNA id: TCONS_00008850


Basic Information

Item Value
RNA id TCONS_00008850
length 400
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id XLOC_004287
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37780578 ~ 37827473 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCTTGGAGGGTATGATACTCGTTGCTCCTGTCTTCGGCTCTTCATCATGGCCTTGTACTCTCCCACCCGCAGTCGTCTACCCTCTACAATACAGGTGCGCTTTGGCCTTGGTTTGTATTTGTAATCTGGGTAACGTTCCAGGTGTTGCCGACTCAATCTGGCCTGCTCCTCATAGTACGGCTGCTTCTCCTGATTGGACATGGACTTCCACCGGGAACCTAAAGCAGGAGCAGACAGGCATAACATTAAGAACTGGAAAACATGCTGGCGAGTCCATAACACCGGAAGCTGAACTTCTGCATCAACTGTACTTCAAACTAAGGCAAAAGCACCTAGTGGAGTGTTGGGATGGGGCAGAAAGCAGCGCTCCATCGCTCAACATGAGGACCCAGACAGGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008184 lncRNA downstream 87874 37687643 ~ 37692704 (-) True XLOC_004285
TCONS_00008488 lncRNA downstream 166040 37613547 ~ 37614538 (-) True XLOC_004284
TCONS_00008181 lncRNA downstream 176597 37601004 ~ 37603981 (-) True XLOC_004283
TCONS_00008487 lncRNA downstream 176614 37593008 ~ 37603964 (-) False XLOC_004283
TCONS_00008852 lncRNA upstream 157478 37984951 ~ 37987558 (-) True XLOC_004290
TCONS_00008192 lncRNA upstream 212491 38039964 ~ 38041422 (-) True XLOC_004292
TCONS_00008853 lncRNA upstream 257399 38084872 ~ 38087013 (-) True XLOC_004293
TCONS_00008855 lncRNA upstream 322416 38149889 ~ 38180391 (-) False XLOC_004294
TCONS_00008854 lncRNA upstream 322416 38149889 ~ 38180391 (-) False XLOC_004294
TCONS_00008187 mRNA downstream 60312 37717556 ~ 37720266 (-) True XLOC_004286
TCONS_00008186 mRNA downstream 60554 37708841 ~ 37720024 (-) False XLOC_004286
TCONS_00008185 mRNA downstream 62869 37708384 ~ 37717709 (-) False XLOC_004286
TCONS_00008182 mRNA downstream 87559 37683278 ~ 37693019 (-) False XLOC_004285
TCONS_00008183 mRNA downstream 89129 37685593 ~ 37691449 (-) False XLOC_004285
TCONS_00008188 mRNA upstream 21232 37848705 ~ 37880492 (-) True XLOC_004288
TCONS_00008189 mRNA upstream 121366 37948839 ~ 37997419 (-) False XLOC_004289
TCONS_00008190 mRNA upstream 122450 37949923 ~ 37995501 (-) True XLOC_004289
TCONS_00008191 mRNA upstream 205642 38033115 ~ 38083397 (-) False XLOC_004291
TCONS_00008193 mRNA upstream 223148 38050621 ~ 38083473 (-) True XLOC_004291
TCONS_00008174 other downstream 481093 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 2555439 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 3314065 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 3424916 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 3814306 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008194 other upstream 347598 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 1120514 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 1262402 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 2355208 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 2850740 40678213 ~ 40696136 (-) True XLOC_004327

Expression Profile

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