RNA id: TCONS_00008198


Basic Information

Item Value
RNA id TCONS_00008198
length 5340
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_004297
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38505157 ~ 38513978 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGATGCGTGTCATGTGACAGGCCTCGGTGAGAAATGCCAACATGGAACCGTGGCAAGGACGATGTTCTTCCCAACAATAACATTGAAAGGGACGCCTGGATTCATCCTATGTCGTGCATCCACAACCCGGACACTTTAATCAATATTCACACGAGTGTTTACAAACCGAGGCAATACTTCCGCCTTCTTCTGACCTGCGCACCAACCAATGGTCTCCATAAGCGACAAAGCGGTGGCCACTGCTAATGAATCGTTTGCGGACCATGCCTTGGCCACCCTGCCCTTCGCGGAGGTGTGCGGCAGTGAGAGCAGCGAGCGGGGCAGCTCCATCTCCTGCTCCAGCCCCGAAACCGGAGATGCTGGAGCTCGACTCTGCTTCAGCCCAGGGGAGGAAGATGAAGACGAAGGCCCTTTGCAGATCTTCCTAGACTCCGCAGAGGAGCTATTAACCCAGATACCCAAGCTGCCTGATTTTATACCCCAGCTGTCCAGCACCTTCTCCCCAACCCTGGAGGACATCGAGGAGTTTTTGATGGAGAAGATGGAGTTGCATGCTCCTCTGAGTCCGGAGGAGAAGTCAAAAGAGGATGACGCTACTGTACCGCCGTCTTCCCCTGGCGAATCTGAGGAGAAATCCAGCATGATGGCAACGTCTCAGACGACTCAAAGTGTTAACGCTACAGCTAGTGCCACATCGGTGCTCGTTGGTGCTCCATTTGTACTTCAGTTGCAACCTCTCCAGCTAAGCCACGCCCTCCCTCAGCCAGACAACCAATCGGGTGTGGCCGGTGGGCTCCGCGTGGCCCACCTGGTGCTCGGTGTCCAGGGGACACAGAACATTACGCTTCTTTCACCGCAGGTGCCGTCTGCAACTCTTCTGCCCATCATGGGCGAAGCTGTCAACCAAGACCAAAAGTATGTGAAGATCGCTCCGCTGCCTATTGCCGTCAGGGCGGTCGGAATCGCGGGCGCAGGCCTGGTCAAAGCCATCACTCCACGTCCATCCAGGTCCACAACGGAAACCTTGCGGGTACATAAATGCTCTCACCCAGGGTGTGAGAAGATGTACACTAAAAGCAGCCATCTGAAGGCCCACTTCCGCAGACACACAGGAGAGAAACCCTACCTGTGCAGCTGGCCGGACTGTGGCTGGAGGTTTTCTCGTTCTGATGAGCTGTCCCGTCATCGACGCTCTCACTCGGGAGTCAAGCCTTACGAGTGCACAATGTGCGACAAAAAGTTCGCCAGGAGCGACCACCTATCCAAACACACTAAAGTGCACCGGGGTCCCCGCGCCGGCAGACTGGTCAGAGCAAACGTCTGACTCCTCCCCCCCAGCCCCGGAAAAACCCACCGTGTGTGATTCCTGGAGTCTGAGAGGGAACGCTACGATATCTAAATGGGCTCACAAGCTGAAACCCTCCGCCTTCATTTACGTCTGTGTCCTTCCTTCTCTCcccctcttttttaaaatcgtttCTCCAGATGTTTGTTTCCCTTGGTGCTACAGTCAGCTAACTTGAATCTCAGGGATGTGATTGTTAAGCTCAAATGCAGATTTCTGGCTTTTCGGTGGGCTAAAGCAAAGGCGAGTTGCATGCGGCAGATTGCCTTCGATTGCCTTTAACCTGGTTTGCAGGTAGTCTAAATGGCAATATAAGCCGAGGATAATCCGTGTTTCTTGTATATTTTGTGAATATTGTGTTATAGATCTAAGCGGGTGAAGATATAAATAAGGAATCcagtatttgtttgtgttttggtttGGCTGTTGAGCATAAAATCCGAAGCCAGAATGCTGCAGAATTTCCCTTcccttttaaattaaaacaatatgcaCTATGATTTAGGCTATGGTGTTATGCAATATCAGGCATGGCCTCTATCTACGGGTGAATCTCAAGGAGAAATGTCAAGAAATGCAATATTTAGTCATGTTTACTGGaagtaaatgtattaaatatatgtaataagtccttattaaaatatgtttgacTTTACCATACATTTTTgacatgggtgtttcccagtactgggttgcggctggaagggcatctgctgcgtaaagccagaatagtaggtggttcattccactgtggtgacctttgaTAAACATTCACAGAACGACAAGCCGTAACATCATTAgacttttgatatttggttggttttgggTTAGAGTTCTGTCCCCTCGACGTTGGGATACGACTTCAATCTGAcagctattttgtttttttaacgcCATTTCGGTcgtcatacagtaaacatccatcatttttgaatccatgagcatctaaaccaggggtgtctaaacttaaTCCTGGAtagccgatgtcctgcagattttagctccaacttgattcaaagaaagcctagtaagagcttggttagctagcccaggtgtgtctgattggggttgaaactctaggactgagtttggacacccctgatttaaacacTCTCAAGTcagtgcgtgtaaagattttggtcTTCTTGCACACTTTAAATTCTTCCAAACAGTTCGCTGCAATAATGAATCACCCATATCCTGAGCTAGTTCAtcatgatgcgatttaccttttCACCTCTTTGTGCAGTTTGGCCAGAAATCCcatcatagacaagaaaaaaataaagtagtgaccgcaggatgaaggaaagtagtggagtaaaagtacagatactgcactaaaaatgtactcaaggcaaAGTAAAAGTCAGCATCTTTAAAACTAATTAATCACTAACAATTCTGAAGAAAAACTACTCACAGTATTACAGAGtacttgtaatttgttactttacaccactgcataaTATATGATTTGCTAATAAATTTGTATAATGCCAATATGTTGAATTTGTAAACTGTACAGTACAGCTAGAAGTATAAATCATGGTAGCATTAGTTTAAATTTGACAGATTTCTAATATCAGGACAAATtaaagatattatattatattaaattgcattatattatatgatattatattatattatattatattatattatattatattatattatattatattaattatattgtattaaattatatttattatattatattatattatattattcatttattttattttaagcttagtccctttatgaatcagGGATGCtgaagtggaatgaaccgcaaactaatgtagtatatgttttacacagaggatgcccttccagctgcaacccatcgccgggaattatataatattatattttattattttttatttattatgttgcaTTACATAAATGAGATGTTTttgcattaaaggggtagttcacccaagaatgaatcatttactcacccatccTTTGTTAAAAACCTTTCTCTGTTGTGTTGAACAGTAGCTTTTTAAGTGCATTTtagatatgtgcataaaaaagttGATTGAAAATACCAAGAtgcgcatcaattttgaaaacgtgcataaaaaacgtatgcgcatagctgagtaggataaactttttatttgataagaaaagatgcgcataaactacaatggaaacacttttaccttACAAagtccagtatgcgcattaaaaaagtcgtgagtttgttataagagatcatgtgaaggtaaaatgtgtgtgaatggacaaaccagcaagctgagcacattgtaaaccatctgaaatgttgttttggtcattctaaaacaccttaagcATTTCAGTTTTAGTGGTATTATATTAATTACTACCTCCAGAATAGTCAAGAGCATCTGTGGTCTGCGTTTCTCGCTTTCAAAATCCGCCATGCGTTCATTGCGTGTCGGCATTATCttaggcgcaagtcatttattaaataaagaaaagattcgcACAGCTTCTCCTGCCGcagcaaattacattttatatttgataATTGGCGCCAGTTAataaggaagtgacgattttgttttctttttttctcgttggatggaaacgctgctttattcacatcttttatgcgatattccagttttgcacaaagttaatttgcatatttaggaACATGGAAATTGGAAGCATAGCTATTAcatccattgacttctattgtatttttttctgatatgGATGACAATGGgtgcattcttctaaatatcttcttttgtgagaAGAGAAACTGAGATAGGTTTTGAAAAAATGATGGGatgttttaaaatttcatttttgggtgaactttccctttgaGGTAATAACAGTAAGGAGAGGAAATGAACACAACAATGCATAAAAGacgcacacacattttttatttgacatttcttTGTGAGATTCACCTTATAAAAGTACTTTAGCTCTTATACGCGAATTGTTACGTAATGCAGGATTAGCtcctgtgtgtatttgtgtttttattttgtacttcGAATGTTTAGTCTCCACCCCTTCCCCCTCGCGCAAATCCAATcgcatcaaaataaaaacatcaggAATTTTCTTGGCCCAATCACATCCCTGCGCCAGCTGAAAGGTATTTATGCATCAAGTTGCTTTCCACAGTTTAGTTTTTCTCGTGCCTCATCTCTCTCAGTCTGTTGAGAGCGTATGCCAAACCGGGATTTCGTCCGCGTACGGGCCCCAGTGGATAACATCACTACATGTATGGACGAATTTGATGtactgtaaaacatatataaGCTAGAAACAACTTTCTCTTCGATCTGTAATCACACAAAAGAGAATTGTTTCCTTTATGTCGTCGTAATGTGCTTTGCATTagatcaatgcatttttttctactTAGTGCCGTCACGGTTGATAAGCTAAATCGCTGAGGACAGCAGTTActgtttgcaaaaaaaacaacaaataaataaattaaaaaaaactggcaGCTGATCGTTTCCAGTTGAAATGAAGCTATCTGGACATCATGTTACCGATACGCCATTGAAGGCTGCAGCTCTGTCATCCATTGGACTGTGCTCGAGTTTCTTTTTGACCATGGATGGGAATTTCTTTGGCGTCATCTTGCCTTTTTTAAATGGGGTCTTAACTACGTTACGCATTTTCTTTCCTGCTCTACTTAGTAGCTATCATAATCCATCAGGTGCTCTACATACTTAGTATCCGGACTTCTCAGTCTTCAAAATGTTTGTAGCACTCTCGTAGGCCTCATCACTTTTAATATCACACCGAGAGCATCCTGATTGACAGTGTTTCCAATAGTACTACCATGTACTGCCTGTTTTAAGATACTGTTCTCTTTTATTTTTGAAGGGAGTTGTCTGTTAACGGGATTTAGAGCATTATTTTCCTTTCCAAGGGCTCATCCTTGATTTTTCTGCCACCACCTTCATCCCAATAAAAGcattaaattatttactttacCTACAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-273 Predicted to enable metal ion binding activity. Orthologous to human KLF15 (Kruppel like factor 15).

Ensembl:

ensembl_id ENSDART00000123381

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008196 lncRNA downstream 30804 38471808 ~ 38474353 (-) False XLOC_004296
TCONS_00008860 lncRNA downstream 79354 38339439 ~ 38425803 (-) True XLOC_004295
TCONS_00008859 lncRNA downstream 306270 38149889 ~ 38198887 (-) False XLOC_004294
TCONS_00008858 lncRNA downstream 314049 38149889 ~ 38191108 (-) False XLOC_004294
TCONS_00008857 lncRNA downstream 314128 38149889 ~ 38191029 (-) False XLOC_004294
TCONS_00008489 lncRNA upstream 694206 39208184 ~ 39212765 (-) True XLOC_004311
TCONS_00008861 lncRNA upstream 789619 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008214 lncRNA upstream 1123762 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008862 lncRNA upstream 1946873 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008230 lncRNA upstream 2123376 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008195 mRNA downstream 12593 38470545 ~ 38492564 (-) False XLOC_004296
TCONS_00008197 mRNA downstream 12888 38480051 ~ 38492269 (-) True XLOC_004296
TCONS_00008193 mRNA downstream 421684 38050621 ~ 38083473 (-) True XLOC_004291
TCONS_00008191 mRNA downstream 421760 38033115 ~ 38083397 (-) False XLOC_004291
TCONS_00008189 mRNA downstream 507738 37948839 ~ 37997419 (-) False XLOC_004289
TCONS_00008200 mRNA upstream 3277 38517255 ~ 38533505 (-) True XLOC_004298
TCONS_00008201 mRNA upstream 26160 38540138 ~ 38554394 (-) True XLOC_004299
TCONS_00008202 mRNA upstream 379841 38893819 ~ 38899816 (-) True XLOC_004300
TCONS_00008203 mRNA upstream 394428 38908406 ~ 38910527 (-) True XLOC_004301
TCONS_00008204 mRNA upstream 398155 38912133 ~ 38914265 (-) True XLOC_004302
TCONS_00008194 other downstream 330007 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008174 other downstream 1205672 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 3280018 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 4038644 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 4149495 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008207 other upstream 434009 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 575897 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 1668703 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 2164235 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008244 other upstream 2564213 41078191 ~ 41084363 (-) True XLOC_004334

Expression Profile

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