RNA id: TCONS_00008211


Basic Information

Item Value
RNA id TCONS_00008211
length 3130
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_004309
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39112341 ~ 39118929 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGGTTTATCATATGACAACTAGGAACACATGATCTTCAGAGACGTCAACAGACGGATGTTTAAATCCATttgctttatttatgtttttacggTGTGAACTGACAGAATGACTATCGCGGATCTCTGGGATCAGAGAATTTCTGCCTTTCTGCTGAGTCCATCTCAGTTTTTGGCCACCAGCACCTCTGAGATTTTCCTGGCTGAACTCCTACACGAACTGCGGAATGATAAAATCAATGATCAACTTAAGATACTCCTTGTGTCTGCACTACTGGAGCATCCAACCATTCTCTGCCCCTCTGCCTCAGTGGGAGAAGAAACGGCTCTCGAACTGCTGTCCATCTTTTCCCAGACACCGCAGAAGTCCATCAGCCTCAAGTGTAATGTCATGCTGGCGATCACCAATGTGATAATATGCACTTCCTGTTTGGCCACGCACACAAAGATGGCTGAAGACTGGCTGGACCTTTTATTTCAGACGATTCAGGACACCAATGACTACAGATGCGGTCAATCCCAGCAGCCTTTAAGAGCCACTGCTTGTGACTGCCTACGAGAAATGGAAACCTGTAGCCCCGGTCTTCTTTCTCAAAAGTTGGAGGCCTTGTATCTTCTCAAACAGCAAGAAACTTCAGTTCTGCATCAGTCCTATTGTATTCTGTATACACTAGGATTGAAGAACGCAATACGGATCTTGACGAACCAAAAAGAGGTTACTGATTTCGAGTTTAAGAGCATATTAGGAGGAAATGAAGGGTTTGCATGGAGAACTAATCAGAATTTCTTGCCAATTAACATGATAGTGCAAGTCCCACAGTTGCCACAAGGACTGGATTGTAAAGAACTCAAATCGATAATGTCTTTACTTCTGGAGGAGTCCTACCTACTAACACCAATTTCCCAGTCTTCCCTAATGAGGGATCTTGTAGAAGTTGTTGCAATGGTGCCTGGACTTTCTCCAACACTATTTAAATCGCAGCTTCTGCGACTGTTTGGCACAGCAGAAGTCGTGCTCATGCATGCCACGCTCTTCATGAAAGACACCTTCACAGATAGTCTTTTCACCGCTGAGGATGAGAACTTTCTGCTTAAGCGTCTGGTGGGATCAGCCCAGCATCCGCTCCTAAGAATTCCCGAAAAACTCTTCTACATGGACTGCATCCTGCATTTCCCTGAAAACCGACCTATATCTAGTAGTGGTGAAGAATGTTTACCTGTGCTGGTTACGCCACGTCTTGCAGCATCTCTTCTCCCTACGGTTTTCAATGATAGTGCTACTATGCTCTGCAGACTGAACCTTCTGTGCCTGGTgcaccttgaggcagatgagggTGAAGCGGATAAAGGAATCGCCTACCTGTTCGATCACATAATGGCACTTTTGAAAATCGTAGACAGCGATGGTAGCAGAGAAGTAGTCGTGACGTCTTTCAgggcattgtttatttttctcaagCACTTCAATGGTATGGAAGAACTCTCGGAGAAGCTGATCGACAAATTACGTGATATTTATTCCAGACATTGCAGACTTGCTCCAAATCTAATTGGCCTTGCAGATCGAATTCAAGAGTGTCTAGACGACCCCATCTGGTCGGTTAAGTTGTTGAGAGGACTTCAGAAATGCATTATGGAGATGCCTCCATTGCAATTGACGATTCACAATTTGAGTTGGCACTTGAAAGTCTTGAAAAGAGTGGCTAAAGAGGGTCAGATCACCCAAAGGAACACCATTTACCTTCTTCTCAACGTTCTCATCAACTCTAACTTGTGTGAACGAGGCAAGTGGCAGATTGGAAACGCAGTTCTTGCTGTTTGTCGCAATCTTTTGGAGCACCCTTCGATTGATCAGGTGTTCATCGAGTTGGCAGATCTTTTGCAATACATTTCAGTTAATTACAATGACACGGACATCAAGGACCACGCTCGCTTCTACTACACATTGCTAACCAATCTTTCATGGGAAAAGCTGACAGGGGTTCTTGCCAAAGGTCCTGATGGAGGACGTGCCAAAGAGCGCTCGCATTCAGCAATTATGGCTGAGAGCGAAGGGATTGCGAGTAACCTGACTGTGTGCAAAACTGAACGGCATGTTTTGCAACTCATTAAAATCCAAGATAAAGTCTCGCAAAGCACTTCAGAGAGTTCTGAATCATTGGAGGATACAGGAGAGGCTAGGAACTGGTTGGAGGTTTATCAAGAACAATTCCAGACACCTGGTTTTGGTTCGGAGGTCACTTTAAGGTACAACCTGACTCATGCAGAAGAAACCGATCCTTTATTCGATAGAGTCTTTTCAATCTGTCTGCATTTTGAGTTTAAAGATTCAAACTACGCAAAGGTGAGTGACATACATGTACCATGTGTGTTTAGAGACCGAAAGCCTCCTGAAGtcaatgtccagcttaaaccatttCAACCCTATCCAACTACTCTATGCTTCAGTGCAATGTTTACCACCCAAGATGGACGCTCATGGCACAGCCAACTGCCTGACGTGAGCATTTCATTCCCAGAGATATTCCTACCTCTACCTATAGCTACAAACGCATCAAGTGCATGCAGAGAGCAAGTGTTTGATCACATCTGGGAGTCTGCAGCCTCTGGGAATCCTGACAAATCCGCCATTAGTTTGTTCTGTTTTAAACCCGGAGATGAAAGTCTAGCCGATCTGATCAAGACACATTTTCAGGGTTACCTGATTACAGATCAGCAAAGTGAACGATTTTGGAAAGTCTTGTTCTTTCTTCCACCGATGTGCCATGTGCTTTTGAGAATTACACAGGCTGAAGATGCCGTTCAGGTCAGCATCGCAACGGACAATTGGGAGCTATTACCGTTTGTGAACTCTTACCTCCGAAACATTACTGATGATTGTAGCACAACAGTAACAGATGGCTAAATGGATACTTCGCAGTTTACACCGATGATTTTAAaccaattaaatatattttattagttcATTATTTTGATATAGCAAATTTCTTTTTGTATATTAAACCTTTCACTAACGTGTCTTTAAAAATGATATAGGTCCACATTATACTGTTTCGTGTGTAGGAAGCAGTGCTTTTTTACTGCTTTACCCAAAATCAAGGTactgaataaatgatttaatgaaatcCAAA

Function

GO:

id name namespace
GO:0016197 endosomal transport biological_process
GO:0030119 AP-type membrane coat adaptor complex cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-131121-204 Predicted to be involved in endosomal transport. Predicted to act upstream of or within protein transport. Predicted to be part of AP-type membrane coat adaptor complex. Orthologous to human AP5B1 (adaptor related protein complex 5 subunit beta 1).

Ensembl:

ensembl_id ENSDART00000113185

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008196 lncRNA downstream 637988 38471808 ~ 38474353 (-) False XLOC_004296
TCONS_00008860 lncRNA downstream 686538 38339439 ~ 38425803 (-) True XLOC_004295
TCONS_00008859 lncRNA downstream 913454 38149889 ~ 38198887 (-) False XLOC_004294
TCONS_00008858 lncRNA downstream 921233 38149889 ~ 38191108 (-) False XLOC_004294
TCONS_00008857 lncRNA downstream 921312 38149889 ~ 38191029 (-) False XLOC_004294
TCONS_00008489 lncRNA upstream 89302 39208184 ~ 39212765 (-) True XLOC_004311
TCONS_00008861 lncRNA upstream 184715 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008214 lncRNA upstream 518858 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008862 lncRNA upstream 1341969 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008230 lncRNA upstream 1518472 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008209 mRNA downstream 7088 39075613 ~ 39105253 (-) True XLOC_004307
TCONS_00008208 mRNA downstream 67746 39013763 ~ 39044595 (-) True XLOC_004306
TCONS_00008206 mRNA downstream 183581 38926724 ~ 38928760 (-) True XLOC_004304
TCONS_00008205 mRNA downstream 187397 38922744 ~ 38924944 (-) True XLOC_004303
TCONS_00008204 mRNA downstream 198076 38912133 ~ 38914265 (-) True XLOC_004302
TCONS_00008213 mRNA upstream 48964 39167846 ~ 39202915 (-) True XLOC_004310
TCONS_00008215 mRNA upstream 905300 40024182 ~ 40030139 (-) True XLOC_004314
TCONS_00008216 mRNA upstream 969259 40088141 ~ 40101246 (-) True XLOC_004315
TCONS_00008217 mRNA upstream 984838 40103720 ~ 40128722 (-) True XLOC_004316
TCONS_00008218 mRNA upstream 1015974 40134856 ~ 40147032 (-) False XLOC_004317
TCONS_00008210 other downstream 22350 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008207 other downstream 162590 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008194 other downstream 937191 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008174 other downstream 1812856 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 3887202 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008222 other upstream 1063799 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 1559331 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008244 other upstream 1959309 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008250 other upstream 2256129 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008295 other upstream 5004445 44123327 ~ 44123458 (-) True XLOC_004381

Expression Profile

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