RNA id: TCONS_00000725


Basic Information

Item Value
RNA id TCONS_00000725
length 4264
RNA type mRNA
GC content 0.42
exon number 17
gene id XLOC_000424
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35985813 ~ 36002774 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGCCTGTCTCTCCAGTTCACAAGTGTTAAAGTTATCAGCTACTTTTTTGCGAGGTCACCCTTTTTCATTCTGAGTTTGTCCCCCCTTTCCACCGCCTTAAAGAAAACATGTCATCAAATCTCGTCGTGTCACATATGTTGAATACAACAAGAAACAGAGAAATTGCGTTTTACTGACAGTGAACAGTATAATAATTTGGTATCTCGTCAGCGGAATGTTTCCTTCCACAGCTCTCTTCGATGAAATAGATTGTCCATTTCTTCAGTCTGGACGATGTCAACGACCTTATTGTTTGTACAATCACAGCAAAGACAGTTCTTCTTGCGTGATGAATACCACAGGTCTTGGAGATCCTAAAGTGACTTCTGCAAATGGATCCTCTCACACCACCGAGGACAATTATGCTTGTCTTGAGGAACTGGAGAGAATCAACAAAGAAATCGAGGCGGTGAGGAGTGAGGTGGAGAAAGAACAAAAAAGACTGTCTCAGTATCAGACATCACAGTCTCTCACACAAACAGGCCAATGCTCTGGAAAATATTTGCGAACCACCAAAAGTAGGCCTAAAGACCAAAATGGTAACCATTTGAAATCCAAAAAGCCTGTTTGCTCAACTAGTGGTCAGAAGTATGTGGTTGACCGTGCCAGACCCAAGACTGATTTGGAATATGACCCCTGTTCTAATTTTTCAGCAGACTTGCTATCTAGCAGCTCAGCAGAATGCAAGCTTAAGTCATCCGACAAAGTCGATATTGATCACGGTCTAAAGAGTAAACAAACCGGAAAAAATGTTCAACCTCTGTCGTCTCATTTTGATGATTCTGAAGATGAAGGTACCTTGGTCATTGACATTCCATCTTTAACAAAAGACCACAGAAAACATAAACCCAAACAGGAGAGTGCAATAATTAAAACACCACATGTACTTGAGAGGAATGGTGCGGTTAACAATGATCTttcaaatcaacaaacaaatccCAACCAGCACAAAGAAAAGTCTTCTGATGGACTTCCAAGCCATGAAATGAAACGCACTGTGAGTGACCAGGAGAACGCAAGAACCTTAGTGAAACCTATGATGATCACAGAAGAGCAAGAATCTTCTGAGGGCGAACTTGTCATTGATGTGTCACAATTTGAGGATGAGCACAAACTTCCACAGCAGCGTGAATCTAAAAATAAGGAACTGCTAGACTTACCAAAATTGTGCCCTGTTAGTAATGCTCCAGCTGAGCATTATAAAGAGGCTAATGATGGGCAGATAATTAAAGGGATAACAATGGCAAATCACCCTGGAAAAGATATTGAACCATTTCTGGAGGATCTAAGAGAAGAACCTGTGGCTGAACCAAATAACTTCACAAATATCAATATGGAAACATTCGTCAAGCAAAAAGAGGAAAAAGCTCACAACTTGGAGAATGTCCTGGATGACATTTCCACATGTCTAAACAATATGAGAAGTCAAAGTGACGAGCTCAAAACCATTCAAGATGTTAAGATGCTTCCTGTTAATTCTGTTTATGGAGATGAATGCATTTCCTCCCAATCTCCAAGAAGTGCTTTACAAAATCTGACTTCTAGAGAACCACAGAACAGCAGCATTTCAGGTTATGCTCTAAAGTCAGAAAATGTATCTTCAAAGGACATCTCTCAGATACATCAGCAGTATTTTCCTATGGTTTCATCTCAGTCCTTACCTTCACCATTACATAAGGCTGAAGAGCACAGATTCTTAGGACCACCACATTCTCAAAGTCTGACTGAAACATCTTGGGTGACTCTTCAGAGTAGTCACGGAGAACCATTTGTTCAGAACACGCCTGCATATGTCTCAGAGATTGATTTTGGTGTTGTTTCTGCACCATCAAATAGTCAGCTCAACCCAAGAACTGTGGAGTCCATAGAAAAATTACCTACATCAAATGTATCATATTCAGCTGCCTGTGACATGACTGTTCCTTCACAGACCTTTGCTACAATGGCAGGAAATAATAATGAACCCATTGTAGTTGACTCTAGTTCTGATGCGGAGCTCAGGTACTCGGACCTAGATCTTTCAGACACCGACCCAATGGAAGAGTGCTACAGGATCTTCATGGAAGCCAACCAAAGTGAGGCTCCTGTGGTTCAGTGTGACGCACCTGATAAAGTTGGAACTGAAATGAAGTCTAATCCAGTAGCCTTGCTAAAGAAAAGGGTCGCACATGTGGCAAAGTTTGAGCCAGCCAGCAAAAGCAAAGCACAAATTATTGTCCCTCTTCAAGAAGGAACCTCCCATTTGAATGTTCCCTCCAGAAGTCAGTTGTGTCAAAGAAGAGCAGCCATTTTGACTGCAGCAGTGAAGGGATGTCAGTCTCAGGTCATTAACAGTGCTCCAAAGAAAGTTTATACATCTAATGTTCATCAAATTCATCAAAGTGCAGTGCAAAACTcatGTGTTGGTATCATTCCGGTTGGTGCCACTCTGCAGCTGGGGACTAACCTGCACTTCATCGTGCCTGAAGGAAATTGTGCTTTACCTTTGACACTGATTCCAACCACAATGTCTGTCCAAAGGCCACCTCATCCTTCTCCACCTGTTCAACTTGCACCAGCTCAACATCCTACTCAACCTGCAAACTATACACCAGCTAAGCGACAAGCAATTTGTTTGTCCACACAAGACTCGACACAACAAAGATTTAAATACCACAGACCTtctgaagcacagaatagtgcactgcaCTCCCAACCAAATGTGATGGGTGTAAAACGAAAAGCAAAAGTTCATCATGAAGTTGGGGCAAAAGTTCCACACGATGTTCGTCAACGTTATGTGAACCTCTTTGTTGAGGAGTTCCTGAAGTCATCTGTGACGGTGCAAGATGCCTTTGAGAAGGCTCTGGCAGAAGAGAAAATTGTTTATGACCGCAGTATCAATAAGCTGAAGTATCTAAGCATCGCTGTCAATGCGCTCAAGAGACTTAAAAACCAAAACATCTTGCCTGCCAAGGCTCCCAGTGAGAGAGATCAGCATGTGTCTAGAGGCAATGTACCACTAAATACTCAAGCACTTCAGGGACCCGGCGATTTGACACTTTTTGAGCAACTGAAGGAGCACATCCTGTCTGAGGATTTGCTACAAGTAAACAACTTCCCTCGTAAACATCAGGACAAAGCTGACTTTGCCATCCAGTATGGAGATACCAAGAAGGGCATAAGTGACCCTTTAAAGAGAATCTGCTGTCGATGTGGAGCAACGTTCTCCGTCGACAGGAGTGGAAAACACACACGCAGAGAAGAGTGTAACTATCATTATGGAAAAGTCATAGAGAATAGAGTGCCAGGCGGTGTTGAGACGCGCTACAGTTGTTGTGAGAATGCAGTTGGGTCACCTGGATGTCAAGTCTTCAATCTTCACGTGCATGATGCAGTTAGCCTTCAGGGCTTTGTGAGCAGTCTTCATCAGTCTGCGGTGGGAAAAACATGTCCAGGAATCTATGCCATTGACACACAAACATGTTACACGACTCAAGGTCTGGAACTAGCAAGAGTGACTGTAGTGAGCAGCAGTTTGCAAGTTGTCTTTGACTCCTTTGTCAAGCCTGATAATGATGTCATTGACTATAATACCAGATTCTCAGGCATCAGTGAAGCTGATGTGAAGAGCAGCAGCTCGTCTTTGCGTGATGTACAAGCAGTGCTTTTGAGTTTTATTAATGCGGACACAATTCTGATTGGCCATGGCTTGGAGAATGACTTGGCTGCCCTCAAAATTATTCACAGCACTGTGGTTGATACCTCTGTGGTGTTTCCCCATCGTCTGGGTTTGCCACACAAAAGAGAGCTAAACAGTCTGACTGCAGACTACCTCCGGAGAATTATACAAGAGAGTGTGGAGGGTCATGACACACGCGAAGATGCCACTGCGTGCATGGAGCTCATGCTCTGGAGGGTGAAAGAAGACTCCAAAGTGAAAAGATGGTGAACTACAATAAAGTTTATCCCTTTACGATATACACCGATGTATATGCATATAAGCTTTGCATGATTATTTTTGTTGaattgttgttactattattaatattattctaaatggCTATGATACATTTGTGTTTGgtcataaagctttttttttgtttgagttCACATTGttgatttatatatttgcaaCGATTAATagaatattgttttttttgtggGCTTATAATGCACTGTGGCACTACTGTAAATAATGAATTCTGGAATAAGGGAAATAAATCAAAGGCATTAACAAGAAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0004527 exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-448 Predicted to enable exonuclease activity. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000139636

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003089 lncRNA upstream 22831 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000721 lncRNA upstream 22831 35956461 ~ 35963062 (+) False XLOC_000423
TCONS_00000722 lncRNA upstream 25838 35956493 ~ 35960055 (+) False XLOC_000423
TCONS_00003088 lncRNA upstream 87456 35896392 ~ 35898437 (+) True XLOC_000421
TCONS_00003086 lncRNA upstream 892381 35034294 ~ 35093512 (+) False XLOC_000415
TCONS_00002855 lncRNA downstream 652683 36651080 ~ 36657815 (+) False XLOC_000428
TCONS_00002856 lncRNA downstream 967603 36966000 ~ 36966282 (+) True XLOC_000431
TCONS_00000757 lncRNA downstream 1213839 37212236 ~ 37259712 (+) False XLOC_000433
TCONS_00000758 lncRNA downstream 1286178 37284575 ~ 37292181 (+) True XLOC_000433
TCONS_00000764 lncRNA downstream 1406593 37404990 ~ 37417631 (+) True XLOC_000435
TCONS_00000720 mRNA upstream 15634 35956435 ~ 35970259 (+) False XLOC_000423
TCONS_00000723 mRNA upstream 22633 35956529 ~ 35963260 (+) True XLOC_000423
TCONS_00000719 mRNA upstream 31580 35949269 ~ 35954313 (+) True XLOC_000422
TCONS_00000718 mRNA upstream 117950 35862550 ~ 35867943 (+) True XLOC_000420
TCONS_00000716 mRNA upstream 150030 35790082 ~ 35835863 (+) False XLOC_000419
TCONS_00000729 mRNA downstream 196364 36194761 ~ 36204000 (+) False XLOC_000426
TCONS_00000730 mRNA downstream 196384 36194781 ~ 36203999 (+) True XLOC_000426
TCONS_00000731 mRNA downstream 438539 36436936 ~ 36440301 (+) False XLOC_000427
TCONS_00000732 mRNA downstream 439188 36437585 ~ 36438731 (+) True XLOC_000427
TCONS_00000733 mRNA downstream 614263 36612660 ~ 36701206 (+) False XLOC_000428
TCONS_00000717 other upstream 182809 35790892 ~ 35803084 (+) True XLOC_000419
TCONS_00000714 other upstream 470620 35494904 ~ 35515273 (+) False XLOC_000418
TCONS_00000704 other upstream 1279423 34695514 ~ 34706470 (+) False XLOC_000411
TCONS_00000699 other upstream 1297251 34685445 ~ 34688642 (+) False XLOC_000410
TCONS_00000695 other upstream 1585539 34400240 ~ 34400354 (+) True XLOC_000407
TCONS_00000728 other downstream 155864 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000735 other downstream 667146 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000740 other downstream 729900 36728297 ~ 36746569 (+) True XLOC_000429
TCONS_00000744 other downstream 1125245 37123642 ~ 37123772 (+) True XLOC_000432
TCONS_00000769 other downstream 1998062 37996459 ~ 37996577 (+) True XLOC_000440

Expression Profile

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