RNA id: TCONS_00008216



Basic Information


Item Value
RNA id TCONS_00008216
length 1630
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_004315
representative True

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40088141 ~ 40101246 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTCATTATCATCAGTATCTTCACtcgcgtctgtgtgtgtgtgtgggagcgCTAGTGACGTTTAGGAACTTTCAGATGTGGTTTATGTGCGAGCGGTTAAGAGTTTTAGACGCAGCGTACCGAAGTAGATCTTCATTTTATCAgagacgagtgtgtgtgtgtatgtctgcgtGTGTGAGGAGCTGATGGAGATGGTGTTTGCTCTGCTTCTCCTGCTTCTGGCTGCAGCTCACAGTCTGGAGTCTGGATGTCAGAACTGGGATATTTCTACTGTAAACAAAGTCGAAGTGTGCTGTGTCAGCTGTAAACCAGGAAACCGTTTAGTCAAAAAGTGTGGTTTAGACCCTAAAGATTTGTGCTCTCCATGTGAAAAAGACACCTTCATCGCCAATCCAACGGAGCGGTCCTGTAAGAGATGCTCCCAGTGTATAGGTCTCATGCGGGTAAAAACGAACTGCACCGCCAGCAGCGACACTGTTTGTGCTTGTAAAGAAGGATATCAATGTTCAGATCACAGGTGCTCTTTCTGCAATAAAGTGTGTGGCAAAGGAGAACAGCCCAAAGGAAGACAATGTGAGCCGTGTCCTCCAGGGACATACAATGACAAGACTCATCACAACTGTGTCAACTGGACCAAATGTACACAGCCAGATCATCAGATCATCGCTGCTGGAACTGCTTCTTCAGATGTGATCTGCGGCCTGACAGCTGTCACCAAACCATGGAAAAACGTGACAAGAAATGATGCAGACATTGGAACGGTCTCCACCATAATAATCATCATCTTTGGGCTTCTCTGCATCTCCTTCCCTGTGGCCACCTTCATCCTGCTGGAGTGGAGGAGAAGAAAAGacggacagaaagaaagaaggaatccTCTcgctgcAGAAGCAGCGAATGCAGAGACGGTTTCAGAGGAGAGCAGTTTCTGTTTCCCCCAGCAGGAGCGCGgtggcagcagcagcagcagcagcagtcagaGCTCACAGTCCTCACTGCTCTCTCAGGACATCGGCCCGCTCCAGCCATGAGGAACACAAgcgtgaccctggaccacaaagccAGTCTTAAGGgtcagctgaataaataagccttCAATAGATGTATAGTTTATAAGGATAGACTCATATTTGGCCGTTGGGAAATCTGGAATCTCAGAGTTTGCCTTTAATATTGTCCAAATGAAGTGCTTAGTTTAATGCGTATTCCTattcaaaaattacattttaatgcacaggtcaagtctgaattattagtcctcctgtataTATCTTTTCCCCAAATTATTgttcagatttcttcaacacacttgtaaacataatagttttaataactgatttctaataactgatttattttatctttatcatgatgacagtaaacaatattggaccagatatttttcaggatactagtattcagataaagttacatttaaaggcttgactagattaattagggtaattaggcaaatcattgtataagtTGTTTTCAATCACATGGATTTGGTGACTTGTGTAATTCAGATGGAGAACAGGAAGtaaaaactgaatgggagacagAGGAAAGTCTGTATTTGTGCAAgttataccatatttcaaaggagatataaatagaaaataaccacatat

Function


GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0019955 cytokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101109-2 Predicted to enable cytokine binding activity and signaling receptor activity. Predicted to be involved in regulation of cell population proliferation. Predicted to act upstream of or within apoptotic process and negative regulation of cell population proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human TNFRSF9 (TNF receptor superfamily member 9).

Ensembl:

ensembl_id ENSDART00000161083

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00008214 lncRNA downstream 442831 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008861 lncRNA downstream 782978 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008489 lncRNA downstream 875376 39208184 ~ 39212765 (-) True XLOC_004311
TCONS_00008196 lncRNA downstream 1613788 38471808 ~ 38474353 (-) False XLOC_004296
TCONS_00008860 lncRNA downstream 1662338 38339439 ~ 38425803 (-) True XLOC_004295
TCONS_00008862 lncRNA upstream 359605 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008230 lncRNA upstream 536108 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008235 lncRNA upstream 576961 40678207 ~ 40678766 (-) False XLOC_004327
TCONS_00008240 lncRNA upstream 659472 40760718 ~ 40761318 (-) True XLOC_004330
TCONS_00008241 lncRNA upstream 757408 40858654 ~ 40860470 (-) True XLOC_004331
TCONS_00008215 mRNA downstream 58002 40024182 ~ 40030139 (-) True XLOC_004314
TCONS_00008213 mRNA downstream 885226 39167846 ~ 39202915 (-) True XLOC_004310
TCONS_00008212 mRNA downstream 969212 39112348 ~ 39118929 (-) True XLOC_004309
TCONS_00008211 mRNA downstream 969259 39112341 ~ 39118882 (-) False XLOC_004309
TCONS_00008209 mRNA downstream 982888 39075613 ~ 39105253 (-) True XLOC_004307
TCONS_00008217 mRNA upstream 2474 40103720 ~ 40128722 (-) True XLOC_004316
TCONS_00008218 mRNA upstream 33610 40134856 ~ 40147032 (-) False XLOC_004317
TCONS_00008219 mRNA upstream 33751 40134997 ~ 40165683 (-) False XLOC_004317
TCONS_00008220 mRNA upstream 33751 40134997 ~ 40172295 (-) True XLOC_004317
TCONS_00008221 mRNA upstream 73915 40175161 ~ 40204621 (-) True XLOC_004318
TCONS_00008210 other downstream 998150 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008207 other downstream 1138390 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008194 other downstream 1912991 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008174 other downstream 2788656 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 4863002 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008222 other upstream 81435 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 576967 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008244 other upstream 976945 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008250 other upstream 1273765 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008295 other upstream 4022081 44123327 ~ 44123458 (-) True XLOC_004381

Expression Profile


Expression of TCONS_00008216 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.25.
End of interactive chart.
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Expression of TCONS_00008216 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.5.
End of interactive chart.