RNA id: TCONS_00008217


Basic Information

Item Value
RNA id TCONS_00008217
length 2646
RNA type mRNA
GC content 0.49
exon number 10
gene id XLOC_004316
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40103720 ~ 40128722 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACAATGCATGCACAGATCTGAGATCAGCACTGTAATGAGAGGAGGACGTGGGCTGAAGGACTGCAGAGTTTTCAGAACATGTTTTGAGACTGGTGGATGCTTTGCTGAGTCAAGAAGTGTATTCGGGCGACGGCTGGAAATGAGCAGATCAGAGTGATGATGACGATGACGAGTAATTTAACACCAGCATTGCCAATGGGAGGAGATAGCAGAGATATGTCAGAACTTGAGGACCGAGTcagtgagggtgtgtgtgtgtgagagagacagaaagacacACAGGCACGGACGGGACATTTCCAAACTACATTGAAGTTTCCTCCTTTCCCATCCACTCTTGATGCCTAAAAAGAGTTAAATATCTTCAGTGCGTGAAGAAGAACCTCAACTATTTGAATTATCCACCTCCTCCTCCCCCTCCAAGTAACTTGCAGCAGCTGCCAGTTTCTGTTTACGAATCAACATGTAATTTTCCTTAGTCACTTCTTTCCTGATAGAAGAAGGATTTCTCCATCATGTCAAACACTCAGGAGCAGAGCCTCAACGAGAACATCGTCTTCGCTCCGCTATCAGAGTCCAGTCCGGAGTTTCTGCACTGCGAGGAGGAGCGCTACTGTGTGGAAAGCCTCATCAGCTCCGGCCCTCAGGCCTTTTACACCCAACTCCATCAGGAACAAATCGGGTCGTTTCTGTCGTCCGGAGAGGTGAAGCAGATCTCCAGCTGGGCTGAGGACTTTCATCAGAGCGATGGGCTTCAGGAGGAAGGCAATGGAGAGGTGGAGGTGGGATCTGAGGGGGAGGATTTCTCTGGACATTATTTTCCGACTGAATCAGACACTCCGGCTCCATGTTTGGAATTAGGATGGCCTGAAAGGGCAATGTGGATGGACACGGGTCGGGTTAATGTGTACACCAATCCTCCAACAGAGCAATCGCCATCCATACGGGAGGTGCTGAGGAGACTAATACAAGCAGCCACCAGGTTGATCGCTGTGGTCACCGATAAATTATCAGACAACGCTGTTATCAATGACCTGCAAAACGCAGCATCTCGAGGGGTTCCAGTGTACATCATCCTCAATAAAAGATCAGTGGAGGAAAAATGCTCTATACATCGCCTTCAGCATCCGAATATCATGATCCGTATTCTCGGAGGTAAAACATTCCTGACGCGCGACTCAAGGATGGTGATTGGAGAACTGAAGGACAACTTTGTGCTGGTGGATCTGGAGACGGTGATGTTGGGGAGCTACAGTTTTACCTGGAGTGACACCTATCTGCACCGTCAGCTCGTCACCGTCATGAGCGGCCCAGTTGTGGAGTCTTTCGACCGCGAGTTTCGGACTCTTTACGCCGCTTCACTTCCAATTCCGGACGCCTGGAAAACTGGAAAACAAACTAGCGAGCCCAAAATATATAAGAAACTCCTGCCGCTGAATATAAACAAAGTGGAAATCAGCGAGTTTGTGTCCAGCCCTCCGCCTCCTCCGACCGACTGCGTGCTGGACTGGGAGGCGATGGGGGTCATCCGCAGGTTCCCGGACGGCAGTTTGAGTCCTCCAGAAGCGGCTCCAGAGCTCCAGTTCCCCCACCGACACCTGCTGGACAGACTCCCGGTTGGAGGAGGATGGGAGATTCCCCATAATGACTACAACTCCAGATTCCTGACGGGATATCCAGAGGAGGGCAAGTTAAATTCAATGTTTCTGGCAGACTTGCGGCACCCAGAATATCAAAGGCCGAGGTACCATTACTCACCTGGAGAAATGCAGTGCAACGAGCCGATGAACAGgtcTCTCCAGATGGCTGACAGAGTGGCGTATCCTCTCCTGAACACTGAAAACGAGGAGCGCTTCCCCGTTTACAGATCTCGAACACACAGGACAGATCTGAGCTCAGAGGAAGAgctgggatctgcactgagacGAGAGCCGTTCCTCAGGAGAGACAGAGGTTTAGGAGAAACCCTGAACACAGAAACCAACGCTCACGTCAATCTTAAGAAGCCATCAGATCTGTCCCGGAGCAAGACGTTCAGCACTTTGAGTGATATTTTTAAGCGGGTCAATGCTCGGGCCACTTCAGGACAGATGAAGACAGAAGACAAAGCGACAGGAGTCAGTAAATCCACAATGGACCTCAATTTACAGCGGACAGACATGCCATCAAACCCTCGAAACATCAACAGTGATAATATTGCTCTGACTCCTGCTCTGGCTCTGATGAAGAAGCGGAACGATGAGGTCAAAACAGGTCTGCTGCGCAGCATGCCCAGTGTTTTCACCCCAAGCTTCAGAACTGCTGGTTTTGGCCTGCAGAGGGAGACGTGGAGGTCTCCGTTCAGAAGAAATGATGAAGAGCAGTGAAAACACAAATCGATGACATCACCAGTGTTACAGTAATCACCACGCTTTGCATTTACTTATGCATATGACACTGAATATGAAAGAGGGAGTTTCCTGCTGAcccaaaatacattttcattagcaCTGATGTCACACTTGAAGAATAagactattaatatatgcctCATTTACATGGACTCATAATTTATGGAATATAAGGCCAACTGCTTGTACTGCCTactgtttaaaatattgtctCATTTTAAgttgaattgtaaataaatatataagagaGGGGC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-21 Orthologous to human FAM83E (family with sequence similarity 83 member E).

Ensembl:

ensembl_id ENSDART00000165781

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008214 lncRNA downstream 458410 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008861 lncRNA downstream 798557 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008489 lncRNA downstream 890955 39208184 ~ 39212765 (-) True XLOC_004311
TCONS_00008196 lncRNA downstream 1629367 38471808 ~ 38474353 (-) False XLOC_004296
TCONS_00008860 lncRNA downstream 1677917 38339439 ~ 38425803 (-) True XLOC_004295
TCONS_00008862 lncRNA upstream 332129 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008230 lncRNA upstream 508632 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008235 lncRNA upstream 549485 40678207 ~ 40678766 (-) False XLOC_004327
TCONS_00008240 lncRNA upstream 631996 40760718 ~ 40761318 (-) True XLOC_004330
TCONS_00008241 lncRNA upstream 729932 40858654 ~ 40860470 (-) True XLOC_004331
TCONS_00008216 mRNA downstream 2474 40088141 ~ 40101246 (-) True XLOC_004315
TCONS_00008215 mRNA downstream 73581 40024182 ~ 40030139 (-) True XLOC_004314
TCONS_00008213 mRNA downstream 900805 39167846 ~ 39202915 (-) True XLOC_004310
TCONS_00008212 mRNA downstream 984791 39112348 ~ 39118929 (-) True XLOC_004309
TCONS_00008211 mRNA downstream 984838 39112341 ~ 39118882 (-) False XLOC_004309
TCONS_00008218 mRNA upstream 6134 40134856 ~ 40147032 (-) False XLOC_004317
TCONS_00008219 mRNA upstream 6275 40134997 ~ 40165683 (-) False XLOC_004317
TCONS_00008220 mRNA upstream 6275 40134997 ~ 40172295 (-) True XLOC_004317
TCONS_00008221 mRNA upstream 46439 40175161 ~ 40204621 (-) True XLOC_004318
TCONS_00008223 mRNA upstream 99031 40227753 ~ 40257225 (-) True XLOC_004320
TCONS_00008210 other downstream 1013729 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008207 other downstream 1153969 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008194 other downstream 1928570 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008174 other downstream 2804235 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 4878581 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008222 other upstream 53959 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 549491 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008244 other upstream 949469 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008250 other upstream 1246289 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008295 other upstream 3994605 44123327 ~ 44123458 (-) True XLOC_004381

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_11163918_11174225.mRNA True 1927 mRNA 0.49 8 CI01000306 11163785 ~ 11174225 (-)