RNA id: TCONS_00008228


Basic Information

Item Value
RNA id TCONS_00008228
length 1461
RNA type mRNA
GC content 0.38
exon number 7
gene id XLOC_004326
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40622310 ~ 40647237 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACAAGTAGGCGTGTGTATATAACAGCGGCGGTTTTGTTTGTGGTTGTTTAAAGTGTGAAGTACCGTTGAAGGAAACGAGGGCGAATTTCACACCTAaaagctaaaatatatatatataaacactaaaaTGTCGTCCATAAACTTGACCAGCTTAGGAGCCAACCAACTGAAAAACACTACGACGGGAGAGATGGTGGAGATTGGTTCTCTGTGGCGGGAGCAGGCGGTGGTTCTCTTCTTCCTGCGGAGGTTTGGCTGTCAGGTGTGCCGATGGATGGCAGCAGAGGTCAGTAAACTGGAGAAAGACCTGAAAGCACATGGCATCGCTCTGGTTGGTATCGGACCTGAGGAGACCGGAGTGAAGGAGTTCAaggatgggggattcttcaagggTGACATCTACATTGATGAGATGAAACAGTGTTACAAAGATTTAGGCTTTAAAAGATACAATGCCATCAATGTGGTTCCAGCTGCTATGGGGAAGAAAGTACGAGAAATAGCCTCAAAGgCAAGTGCTGAAGGAATTCAAGGGAACTTTAGTGGAGATCTTCTGCAGAGTGGAGGCATGCTCATTGTTGCAAAAGGTGGAGAGAAAGTTCTGCTGCATTTTATCCAGAAATCGCCTGCAGACAATCCACCTCTGGAGGAAATCACTAAAGCTCTCGGGATCTCTGCGAACGTCCAGGCTGGGGAAAAACCACAGTGCAATGAAGATGTTTGCACGAGATAAAGGATTCGTTGTTCTTCATGGACACATTAACTTTGATTGCAGGTTATCCAGTGGTTGGATTGACTTTATTTTGACTTGGATCAATTGTTTTATGTGATGCATAATAAggtctcactttattttaatggtccgtttgttgaatttaagttagattgcatctacatgccaactaattctcattagattatatgtaGACTTTTAGTTTGGggtagtgtaagttgacatgtacttgcaaagtttcttatagtcagttaaatgtctgttaaaggaacAGTATCAACATAtactaagcagacagtctactaacactcaaatggaccatcaaaataaagtgttacccataataATAACATGTCATGCTAAAATACAATGCACTGATCATGCAATTAGGACATTTTGaaaattgaaaacatttttatattcactGCAATCTTGTGttgatttaaaacattaatatgggtttaatcataaataataatagccTCATTAATCAACCAACAGAAAAGTTGCGTTCTGTCAATTGATCTAAAAGGTATAGcatatatgaaaataaatcataataaatatgtttataaatgaaTCTCAGACACATCTGACCAAATGTTAATGAAACATTGTGTAAACGATGACATTTTTGAGcatgtatatattaaaaatcaCTACCAAagcatatttgtgtttttatgcatgaatgtgaacaaataaaaaatggacATGCACAAACAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0006693 prostaglandin metabolic process biological_process
GO:0001516 prostaglandin biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016209 antioxidant activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00590 Arachidonic acid metabolism

ZFIN:

id description
ZDB-GENE-040426-2556 Predicted to enable antioxidant activity and oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be involved in prostaglandin biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process and prostaglandin metabolic process. Predicted to be located in cytosol. Is expressed in gut and pronephric duct. Orthologous to human PRXL2B (peroxiredoxin like 2B).

Ensembl:

ensembl_id ENSDART00000147264

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008862 lncRNA downstream 159823 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008214 lncRNA downstream 977000 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008861 lncRNA downstream 1317147 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008489 lncRNA downstream 1409545 39208184 ~ 39212765 (-) True XLOC_004311
TCONS_00008196 lncRNA downstream 2147957 38471808 ~ 38474353 (-) False XLOC_004296
TCONS_00008235 lncRNA upstream 30970 40678207 ~ 40678766 (-) False XLOC_004327
TCONS_00008240 lncRNA upstream 113481 40760718 ~ 40761318 (-) True XLOC_004330
TCONS_00008241 lncRNA upstream 211417 40858654 ~ 40860470 (-) True XLOC_004331
TCONS_00008242 lncRNA upstream 246529 40893766 ~ 40895245 (-) True XLOC_004332
TCONS_00008490 lncRNA upstream 301652 40948889 ~ 40949818 (-) True XLOC_004333
TCONS_00008227 mRNA downstream 102424 40505044 ~ 40519886 (-) True XLOC_004325
TCONS_00008226 mRNA downstream 118140 40467618 ~ 40504170 (-) True XLOC_004324
TCONS_00008225 mRNA downstream 164985 40431629 ~ 40457325 (-) True XLOC_004322
TCONS_00008224 mRNA downstream 203335 40331791 ~ 40418975 (-) True XLOC_004321
TCONS_00008223 mRNA downstream 365085 40227753 ~ 40257225 (-) True XLOC_004320
TCONS_00008232 mRNA upstream 30379 40677616 ~ 40681054 (-) False XLOC_004327
TCONS_00008233 mRNA upstream 30741 40677978 ~ 40681011 (-) False XLOC_004327
TCONS_00008234 mRNA upstream 30884 40678121 ~ 40681089 (-) False XLOC_004327
TCONS_00008237 mRNA upstream 66486 40713723 ~ 40728380 (-) True XLOC_004328
TCONS_00008238 mRNA upstream 84365 40731602 ~ 40742424 (-) False XLOC_004329
TCONS_00008222 other downstream 439514 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 1532319 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008207 other downstream 1672559 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008194 other downstream 2447160 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008174 other downstream 3322825 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008236 other upstream 30976 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008244 other upstream 430954 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008250 other upstream 727774 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008295 other upstream 3476090 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 3689920 44337157 ~ 44339220 (-) True XLOC_004385

Expression Profile

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