RNA id: TCONS_00008493


Basic Information

Item Value
RNA id TCONS_00008493
length 1288
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_004353
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42121855 ~ 42124271 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTAAGCGGAGGTAAACAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGGCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAGGTTTTCAAGTTTTATGCATCTTCCTACCTGTGCAATTATGAAGATAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATTCGTCAGAAGATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgctttgcttttccagacagcccattactctgaaatgtgtaatgtgtgttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagatgggtgatttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAACTGattcaatgtcatttttttctgttcatctgaataaaatatttttttcaaaatgttacatttttttgacaatttttatttcaaattacatacagtgaattatattttatatgtacagtgaataaaataaaggtctttattctgaattaaaaaattgcacttagaaagtagcttaagaaatgtttatgtatattaatgttctttttttttacttcaaaggcaatgaaagtaaactattatttgccataaaagctcctttctttaaatgtctgcatCCGGTTGGCACTCGAGCCTCGATCAGTTTTCTAGACTGAAATTGTCAGCTAcactcttgtttttttctgtttctgtaaaattCTCACGTTTAATATCAACAACCCACCTCTTCTGTACGACTTTGTCTTTTGGAATCGTGTGGAAACTAAGGTAAGAGTTCAATTTCTGACGCTGTGCGTTGCTGAACACAGCAGTGGTATCTACAAGTACTGTTCTCACgtctttgaaatgacacttttaaacgtttagatgtcatatttatgtagctgacatagacatatataagtgggctataatggcataaaacattaagacaacTGTCCAAAACATTACTCGTTTTTATCAGTAGCGCTCCTGTTGTAGCACTGTACTGTACGATCGCCGGAAGTAGGCTCGGGGTCTTAAATTTTACCGGAAATGCGTCACGCGCCgccgtgcatagagcccatta

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043167 ion binding molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008867 lncRNA downstream 77574 42042562 ~ 42044281 (-) True XLOC_004349
TCONS_00008865 lncRNA downstream 95257 42004163 ~ 42026598 (-) True XLOC_004347
TCONS_00008866 lncRNA downstream 101990 42016754 ~ 42019865 (-) True XLOC_004348
TCONS_00008491 lncRNA downstream 122438 41975577 ~ 41999417 (-) True XLOC_004345
TCONS_00008864 lncRNA downstream 411798 41699575 ~ 41710057 (-) True XLOC_004340
TCONS_00008494 lncRNA upstream 27192 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008495 lncRNA upstream 611012 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008496 lncRNA upstream 618282 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008497 lncRNA upstream 628649 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008869 lncRNA upstream 685262 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008257 mRNA downstream 15545 42101661 ~ 42106310 (-) True XLOC_004351
TCONS_00008256 mRNA downstream 22210 42062067 ~ 42099645 (-) True XLOC_004350
TCONS_00008255 mRNA downstream 124898 41994287 ~ 41996957 (-) True XLOC_004346
TCONS_00008254 mRNA downstream 155001 41966117 ~ 41966854 (-) True XLOC_004344
TCONS_00008253 mRNA downstream 267981 41846059 ~ 41853874 (-) True XLOC_004343
TCONS_00008258 mRNA upstream 4300 42128552 ~ 42134968 (-) True XLOC_004354
TCONS_00008259 mRNA upstream 26644 42150896 ~ 42230491 (-) True XLOC_004355
TCONS_00008260 mRNA upstream 180333 42304585 ~ 42418374 (-) False XLOC_004357
TCONS_00008261 mRNA upstream 183313 42307565 ~ 42315748 (-) False XLOC_004357
TCONS_00008262 mRNA upstream 183525 42307777 ~ 42417194 (-) False XLOC_004357
TCONS_00008250 other downstream 746729 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1037492 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 1425719 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 1939059 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3031864 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1999075 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 2212905 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 2482599 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 3307281 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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