RNA id: TCONS_00008496


Basic Information

Item Value
RNA id TCONS_00008496
length 1029
lncRNA type intronic
GC content 0.41
exon number 3
gene id XLOC_004363
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42742534 ~ 42745180 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTGCCACCAGATCTCTCTCAATCAAACAGCAGCTCAACAAAGTCTCATTGAGGGTTTCAAACGTGTGGCAGAAAACCAACATACAGCACACATCTTAGACCATAAAAATGGCTAAAGCTTATGTAGAAGCGGGAGTTGGACAAGTTGGAACTGAATTTTCAGTTGGTGCAGAAGCCAAAGGTCCGAATGCCTCAGCTGGTATTGGAATTGATGCGGATGGAGGAGCAGAAGCAATGGCTCGAGCTGAAATTGGCAGTGCATCAGTTCATGCTGGTCCAGTCGGTGTGAAAGTGGGACTCGGAGTCGACACCGGTGCATCTGTTGGTCCAAACGGGCTGGAGGTCAAAGTCCTGGGAACTGGAGTCACGCTTGGTCCGAATCCCAGTATTGCTCTTCTGGGTTCAGAAGTGTCATGTTCAGTCATGTAGACATGCAGgtgtGTTGCATTAGATGGCACCATTGACAgtttggatccaacttttgtgaAGATTTTAAGTGacacctaattaaccaagttaagtctttaaatttcactttaagctgaatactagtatcctgtgaattaactagtaaaatataatgcaaTGTCACCATCACAACAACAAGACATTAGTTattaaagggctcctattttaccccctttAAAACATCTTACATAAGTCttctgtgtctccagaatgtgtctgtaaagtttcagctaaaaataccaTTTTACCACTTATACCCTCCTGAATATTCACATTTTATGCTCAGAtgacagtgtagctgtttttgttgcctgtgtgCAATGCAACGACGCATTATTTTCTACACACACGTTTACACTGTTTGCACATCTACTTGAAGCATCCTCGTATAGCCTCTATGCGGCTGTGGTGCTTCAATAATCCGTTATGAATTACATTGATTTTACAGTCTTTTCTATATTACAAACATCCACTGTTTTAAAACCGTTTGAAACTCATTCTTGGGGTactgctgatcacagagagtctgagcagatcttttaatcccttTTTCCCATTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008495 lncRNA downstream 6686 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008494 lncRNA downstream 589961 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008492 lncRNA downstream 617252 42113072 ~ 42125282 (-) True XLOC_004352
TCONS_00008868 lncRNA downstream 618263 42122748 ~ 42124271 (-) True XLOC_004353
TCONS_00008493 lncRNA downstream 618282 42121855 ~ 42124252 (-) False XLOC_004353
TCONS_00008497 lncRNA upstream 7721 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008869 lncRNA upstream 64334 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008870 lncRNA upstream 316702 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008871 lncRNA upstream 456355 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008287 lncRNA upstream 483232 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008273 mRNA downstream 3386 42731890 ~ 42739148 (-) False XLOC_004362
TCONS_00008272 mRNA downstream 12471 42720203 ~ 42730063 (-) True XLOC_004361
TCONS_00008271 mRNA downstream 188244 42532464 ~ 42554290 (-) True XLOC_004360
TCONS_00008270 mRNA downstream 217084 42506052 ~ 42525450 (-) True XLOC_004359
TCONS_00008269 mRNA downstream 269593 42466834 ~ 42472941 (-) True XLOC_004358
TCONS_00008274 mRNA upstream 1189 42746369 ~ 42750626 (-) False XLOC_004364
TCONS_00008275 mRNA upstream 1189 42746369 ~ 42752884 (-) False XLOC_004364
TCONS_00008276 mRNA upstream 5034 42750214 ~ 42755108 (-) False XLOC_004364
TCONS_00008277 mRNA upstream 9596 42754776 ~ 42761293 (-) True XLOC_004364
TCONS_00008278 mRNA upstream 165724 42910904 ~ 42918971 (-) True XLOC_004366
TCONS_00008250 other downstream 1367408 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1658171 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 2046398 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 2559738 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3652543 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1378147 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 1591977 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 1861671 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 2686353 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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