RNA id: TCONS_00008497


Basic Information

Item Value
RNA id TCONS_00008497
length 949
lncRNA type read_through
GC content 0.40
exon number 2
gene id XLOC_004364
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42746369 ~ 42761293 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgacgacattattagaccattttttcactggtaaaatgaaacaaaagatTGTGTAAATACACCTACTGAATATGAAACCTTCTGTGCCACATTTGCACTGTGCATTCAGCATGCAGTTTATTCATATAAAGTGTGCTACATTTTGAAATGTCTAAActatattttcctttattttcagATAACAGCGTAAATGGGGAATTTTATACCTGCAATCtgcgaaaaaaaaataaaaaaataaatttaaatgtttcaaGTGATGTTGCTGAGATTACAAGGTCAAACACATGGAAGGGAAAGCTGATCAAAAAGGATATTTCAAAAAAGCCAAGTGTGGAAATTGGATCCGTCAATGCTTCTTTAAGCGGTGTCATAGGCATAGCTGACACTATTGACAGACCACCAGCGGCCACGGCAGAAGGTGTTTATGCTAACACTGGTGCATATGCAACTGGTAATGAATATAAACCAGGAAAGAGACTCCCCAAGGCTAGAGCTTTTGCAGAAGCAGGAGTTGGACGAGCTCGAGCTGAAGTCGGTATTTATGAAGCAGAAGCTAAAGGCCCCAATGCATCAGCTGAGGCTGAAGCCAGTACAACTTTAAGAGCATCAGCAATGGCTCGAGCTGAAATCGGCAGTCTATCAGCTAGTGCCGGTCCAGTCGGTGTGAGATTGGGTCTTGGAGTTGACACGGGTGTATCTATTGGTTTGGATGGGCTGGAGGTCAGAGTCCTGGGATTTGGATTCTCAGTTGGTCCAAGAACCAGTATTTCTCTTCTGGGATCAGAAGTGTCATGTTCAATCTTGTAGACATACAGGTGGTTTTCATTAGATTACACCTGTTTGGATTCAACCATTGTGAAGATTAATGGACAACAACAATTGCAGAAGATGACGACTAATGATGATAACAATTCCTATTGCATTATAAATGTTGTTCTAGTCATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008496 lncRNA downstream 7721 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008495 lncRNA downstream 17053 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008494 lncRNA downstream 600328 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008492 lncRNA downstream 627619 42113072 ~ 42125282 (-) True XLOC_004352
TCONS_00008869 lncRNA upstream 55514 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008870 lncRNA upstream 307882 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008871 lncRNA upstream 447535 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008287 lncRNA upstream 474412 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008872 lncRNA upstream 701469 43455469 ~ 43457258 (-) True XLOC_004373
TCONS_00008275 mRNA downstream 17 42746369 ~ 42752884 (-) False XLOC_004364
TCONS_00008274 mRNA downstream 2275 42746369 ~ 42750626 (-) False XLOC_004364
TCONS_00008273 mRNA downstream 13753 42731890 ~ 42739148 (-) False XLOC_004362
TCONS_00008272 mRNA downstream 22838 42720203 ~ 42730063 (-) True XLOC_004361
TCONS_00008271 mRNA downstream 198611 42532464 ~ 42554290 (-) True XLOC_004360
TCONS_00008277 mRNA upstream 776 42754776 ~ 42761293 (-) True XLOC_004364
TCONS_00008278 mRNA upstream 156904 42910904 ~ 42918971 (-) True XLOC_004366
TCONS_00008280 mRNA upstream 175547 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008279 mRNA upstream 175547 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008282 mRNA upstream 179823 42933823 ~ 43002262 (-) False XLOC_004367
TCONS_00008250 other downstream 1377775 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1668538 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 2056765 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 2570105 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3662910 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1369327 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 1583157 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 1852851 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 2677533 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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