RNA id: TCONS_00008277


Basic Information

Item Value
RNA id TCONS_00008277
length 3622
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_004364
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42746369 ~ 42761293 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCGAAGATCACCAAACGCTCCCATCATAAGGAAAATGatgAAGATGCTGATATTCCTTCTACCAAACACCATCCCCAAGATGATAGTGAATGTGTTATCAAATCGTCGACAGCACAACTTACGTCCAGCGCAGAAGACCAGCCCTTTTACATGTACAACACCTATGACAGACCAGCAGACGCCAGCGCAGAGGGCGTGTTTGCTCAAAATGGAACATATGAAGTCAAATATGAAGACAAACCAGGAAGGAGATTCTGGAGGTCTGGATATATTGCAGAAATAGGGGTCGGACGAGTTAAAGCTGAATACAGTGTACTTGAGTTCAGAGCTAAAGGCCCCAATGCTTCAGTGAAAGCAGAAGTGAGTAAAGTTGGAGTCGGAGCAATGGCTGGACTTGAAATCGCCAGTGTAAAGGCTAAAGCCGGTCCATTTGGTGCAAAACTGGGACTTGGACTGGACACGGGTGCATGTATCGGTCTGGGTGGGGTGAAAGCAAAATTTTTGGGAACTGGATTTTCTattggtccaaaaactagtatatGTTTATTTGGTTCAGAATTGTCATTTTCACTCTGGTAAAAATGATCATTATACATTTCTTGTGTAGCATcttatcatagatatatacactagatatcgcataaggaccctgagcatgcgtcaatagcgccgccatattggtacagtgctcccaggacaaatgtcattcaaccgcactagtcaagacagtgttattatgtgaagatgcgggtctttagcgctgtctacgggtgtagtaacgagcaaacaaagaaaacaaaccacagaggcagaacatttcataggtaatattaagttttttttctgtttttgtatgttctgaacttttgtgctttctgcattcaccataagacaaagcagctccaacttgcactaaacactcagcttatgctagttttgttgaataaaatcagcaaacaatgcaaaagaaatatgacaacgagatgctgcgctgccagaaacttgtattattgtcggctaacgttagtgaaggagtcgttcataacggagattcattcacaaacaaatcgctccctccgtcagtatgagaagtgaaagcaggagaggatcTGTGTTTCAGGACGcaaattagatcaaatttaaccgGGAGGTtaaatagtacatttccatacacacaaacacaagctttttgtcagtaatgcccgtgcggtcactgatccatcaatgtagaaaagtgatgtaaaattataattttcgtaataagaaaaaaaaattacatactaacatccaggaaaactcccgatcatagatatatgtgtatatatctggctttgcatggccacagtcctccactgtacattggtcccgcattcatttcaaaggagcgctaccctgtagtaAGATGGCAGCGctattccgtccaatagacaacaataggccaggcgacatctagtgtatatatctatggcatcTTACTATTAAACTATGAGAACAAAAACTATGCAAAAACTGTAATTACTGACATACAGACATTAATCAATGACTCTGTAACTATGCATAGTAATCACATGTGTttcacactaaataaataaagcagcattgAATGCTTATGCTTTACTCTTCatttctgtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtgtttttgtgacatgtcaggacacaaatctgtataatgtcatgggtatgacacaggtattacaaaaaggaggtgaaatatgaggacaatggtgacgtcctcgtttctcaaaatgcttataaatcccacagaatgagtttaatcagagagtaaagctgcacacagtctcctgtgatggttgggtttaggggtagggtggggtgagggcaatacaatatacagtttggatggtataaaatgaatggaaacctatgtaatgtccccacttttcacataaaacaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcactgaACCACTCCAGTGTTCTTTTACATAAACACTGTATAAATCAGCTGTGTTTTTCTTTACAGGAATGTCCAAAAGATTTGAAGTTtggtattaaaataatgtttgacaAATCACttcattgtaattttatttaaagcagTCGACATTTTCCTAAAACCACAGATCTTTCCTTTTCCACATGTCTGTCAGTTTGGCAGAATTAGCCTgatctcattcattttctttcatatCAACAGCTCTAATCTGGTCATGTGgcacaaaaacatttttgtttcattaattaatCCAATTTACGATCACACTTGCTCAGTGCAGTGAATGAGAGTCCAAACAGCTAGTAGAAACTTCAccacaatattaaaaacaaaatgtcattaAGTTATGTTGAACTTCTAACTTATCTTCTGATTTAATATCCCCTATCTCTGACATTACTTTCTCcagtaaaaaaaataaggaaaatcTGTTTTCCTCTCCCATTAAAAAAGCCACTTACATATTTGAACTGTCAAATATCTGTTAAACAAGTCTTCACTACTAAAAAATGACTCATATTTTAGAAGAAATTGTAACCCCTTTAGCAAAAgtgtgtaaaataaacaaatagatggCATAGCTGAAAAACACACAGCTCTCTCAAACACTTATTTTCTTGAACTGCAATCTGTAAAGCAGACAGTTTTTCTTTCTAACCAGCAGATGGTAGTATTTGCCACAACATCAATATAAATATTCAGAAACAACATATTAAAAACACTCAAAATGTAGTTTGTTGTATATTTACCAGACCTTGCCTAAATTGTTAATCCATTAAAGAGAAAATAACAACAATGTTAGCCTCAACTTACAGACATTCAACACCTGTTTTATTTTTCCCCACAACACACCCTTCAGACCGAAGATACCATTtgcaaatacaaaaacacaacaacattattttatataaactgCTTTTGGTAGttttaaaattagcttttttttaggAGCACCCGGAGCACATATGAGTTTGGAAGCAAATGAGAAGGAAAACGAAACCAAAACAACAATACGAACAGTCTGGATGCAGACGGAGTGCAGCTGATATCAATGCTTTTACTGCGCAAAGCTAACCCCACCCTGAccatcacagtgacatcactaaaTCAATTGAGTGCATCACTGAGACATACAATGTTGGCTTGCATTTGCTAGTCTGCATACAGATAATATTGATATGAACAGCAAACTCCTGGGCATCATAACAGTGTGGCAGggaaaaaaatgactgaaaaccGAGAAATAACACACGATGGAGACAACGACAATGGTAAGTGCAATTGAATAGTTTAACCTTGGTTTAAGAACCATGCAATGAATTATGAATTGATatgaaagtatttttatttaatcttccATGGTAACGTctttgtggctggaaggggatctgccacataaaacatatgccagagtaatatATCAGaatatgcagtgctcagcataattgagtacagcccattttgaaaatgaatatttttctccatttctcagtgaatatgggtaatatatgctggtgcatttgaaaattcattcattttctttttggcttagtccctt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000183736

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008497 lncRNA downstream 776 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008496 lncRNA downstream 9596 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008495 lncRNA downstream 18928 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008494 lncRNA downstream 602203 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008868 lncRNA downstream 630505 42122748 ~ 42124271 (-) True XLOC_004353
TCONS_00008869 lncRNA upstream 48221 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008870 lncRNA upstream 300589 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008871 lncRNA upstream 440242 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008287 lncRNA upstream 467119 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008872 lncRNA upstream 694176 43455469 ~ 43457258 (-) True XLOC_004373
TCONS_00008275 mRNA downstream 1892 42746369 ~ 42752884 (-) False XLOC_004364
TCONS_00008274 mRNA downstream 4150 42746369 ~ 42750626 (-) False XLOC_004364
TCONS_00008273 mRNA downstream 15628 42731890 ~ 42739148 (-) False XLOC_004362
TCONS_00008272 mRNA downstream 24713 42720203 ~ 42730063 (-) True XLOC_004361
TCONS_00008271 mRNA downstream 200486 42532464 ~ 42554290 (-) True XLOC_004360
TCONS_00008278 mRNA upstream 149611 42910904 ~ 42918971 (-) True XLOC_004366
TCONS_00008280 mRNA upstream 168254 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008279 mRNA upstream 168254 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008282 mRNA upstream 172530 42933823 ~ 43002262 (-) False XLOC_004367
TCONS_00008281 mRNA upstream 172530 42933823 ~ 43002262 (-) True XLOC_004367
TCONS_00008250 other downstream 1379650 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1670413 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 2058640 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 2571980 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3664785 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1362034 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 1575864 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 1845558 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 2670240 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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