RNA id: TCONS_00008870


Basic Information

Item Value
RNA id TCONS_00008870
length 675
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_004368
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43061882 ~ 43062986 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgagtatttatgttttatttatatttatgaaacAATTGTTTCAGCTATTACAGGAATAAataccttttaaaatataataatgttaagaaattaattaaattgtaaaaaaaaaacatttcatctatatttgttcaaataaatgcatccttttaaaaatgcttaattaattaaaatattaaatcactTATACTTTAAGTAAACTTTACAAATAATCAAGGTTAGGTTCATATTTACAGTAATACAATTCAAATAGAAgcaaaactggacaataaaggGACAAAGGAGTTGTTTTCTATGTAAAGTGTGTTAATCTCTACCAAATATGTGTTGTGTTGTGAGTTTGTTGTGTTgtagttttgtgtgttttaagttTGTTGTGTTGtggtttgttgtgttgtgttgtgagtTTGTCGTGTTGTGGTTTTGTGTGTTGTGAGTTTGTTGTGTtgtggttttgtgtgttttaagttTGTTGTGTTGtggtttgttgtgttgtgttgtgagtTTGTCGTGTtgtggttttgtgtgtttgtttagtagCGCGTGCCAAATCCATGAATCTCCAGTTTGGAAATGTCTCTCTCGTTGCTGAACTCAGCGCGGGCGATGCGAGAGCTCGGGCTGCCCACTTTACTGAGCCAATACTTCCTGGAAAAGagacacaaacagacaaa

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051172 negative regulation of nitrogen compound metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0014856 skeletal muscle cell proliferation biological_process
GO:0048513 animal organ development biological_process
GO:0014857 regulation of skeletal muscle cell proliferation biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0016477 cell migration biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009890 negative regulation of biosynthetic process biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0009892 negative regulation of metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031324 negative regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0031327 negative regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:1902679 negative regulation of RNA biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051253 negative regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1903507 negative regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0048870 cell motility biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0008283 cell population proliferation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0040011 locomotion biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0045934 negative regulation of nucleobase-containing compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010558 negative regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:2000113 negative regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0061351 neural precursor cell proliferation biological_process
GO:0001954 positive regulation of cell-matrix adhesion biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0070579 methylcytosine dioxygenase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008869 lncRNA downstream 244178 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008497 lncRNA downstream 307882 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008496 lncRNA downstream 316702 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008495 lncRNA downstream 326034 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008494 lncRNA downstream 909309 42151444 ~ 42152573 (-) True XLOC_004356
TCONS_00008871 lncRNA upstream 138549 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008287 lncRNA upstream 165426 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008872 lncRNA upstream 392483 43455469 ~ 43457258 (-) True XLOC_004373
TCONS_00008873 lncRNA upstream 398409 43461395 ~ 43466520 (-) True XLOC_004374
TCONS_00008874 lncRNA upstream 650724 43713710 ~ 43716304 (-) True XLOC_004376
TCONS_00008282 mRNA downstream 59620 42933823 ~ 43002262 (-) False XLOC_004367
TCONS_00008281 mRNA downstream 59620 42933823 ~ 43002262 (-) True XLOC_004367
TCONS_00008280 mRNA downstream 81347 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008279 mRNA downstream 81347 42929547 ~ 42980535 (-) False XLOC_004367
TCONS_00008278 mRNA downstream 142911 42910904 ~ 42918971 (-) True XLOC_004366
TCONS_00008283 mRNA upstream 39435 43102421 ~ 43104475 (-) True XLOC_004369
TCONS_00008284 mRNA upstream 72212 43135198 ~ 43200994 (-) False XLOC_004370
TCONS_00008285 mRNA upstream 72213 43135199 ~ 43137712 (-) False XLOC_004370
TCONS_00008286 mRNA upstream 83366 43146352 ~ 43226255 (-) True XLOC_004370
TCONS_00008288 mRNA upstream 407190 43470176 ~ 43473824 (-) True XLOC_004375
TCONS_00008250 other downstream 1686756 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 1977519 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 2365746 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 2879086 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 3971891 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 1060341 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 1274171 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 1543865 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 2368547 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

//