RNA id: TCONS_00008871


Basic Information

Item Value
RNA id TCONS_00008871
length 1006
lncRNA type intronic
GC content 0.45
exon number 3
gene id XLOC_004371
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43201535 ~ 43204207 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTATAGTGCAGTTGTGTAGTGTATAGTGTGTATTGTGTCCTCTAAGGGTCAGTGAGGGTCATCTCTGTGCTCCAGCggctttagatgtgtgtgtgtgtttgtccaccTATAGTGCAGTAGTGTAGTGTATAGTGTGTATTGTGTCCTCTGTGGGTCAGTGAGGGTCATCTCTGAGCTCCAGCGGctgtagatgtgtgtgtttttgtccaCATGTAGTGCAGTAGTGTAGTGTGTAGTGTATAGTGTGTATTGTGTCCTCTGCGGGTCAGTGAGGGTCATCTCTGAGCTCCAGCAGctgtagatgtgtgtgttttgtcctcTGGCAGATGTTCTTCTTCCTCTGTTTGTTGTGTTTGGGGTCAGTGTGTGTCACTCCACCTCTGCCTCTATTCTCTGGATCTCGCTCTTCCAGACGGTCATCCTGGAAAACGTCTGGTGTCCGCAGACGCTGGAGAACAATTGAAGCAGACACTTGCGTCTGTGCCCGTCAGGAATGCAATAACAGGAAAATTGGGAGGATTATAAATAAATGCTCGTATTTTGAACTGTTGACCCCTGCTgacatgcataaataaacaaggcCGCCGCCCCCTTTGCATTGTTTCCCAATGTTTGATTGGTTAGTCCGTGCATGAGTTATGGGAGAGATTTTGGAAATGGGCTAAAGGAGTAAAAAAGGTTTGGTATGCGAGGGAAGGAGTTTCAGGTTGCGACatgggtgaatgtgtggcttcaTGGagaagtttttaaaacatttgattctTCATCCAAGAGCAATGATTGGAGTTGAGGAATGTTTCTGGGGGAAATGTTGCAATGATTGCGGACCATTACAACGGCCTCCTTTCGTCCTGCAAGATCTAGTTCATACCAGTCTAAATTTAGCATGTGTAAAATGCAGGATTCTGTGGTAAAGTCTAtttctcagcagcagaaaacAATACGGAAATATCTGATGATTTTGTGTATTGTGGTAACAGGAAATAGAGTCCCGtttatatag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008870 lncRNA downstream 138549 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008869 lncRNA downstream 383831 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008497 lncRNA downstream 447535 42752901 ~ 42754000 (-) False XLOC_004364
TCONS_00008496 lncRNA downstream 456355 42742534 ~ 42745180 (-) True XLOC_004363
TCONS_00008495 lncRNA downstream 465687 42735264 ~ 42735848 (-) True XLOC_004362
TCONS_00008287 lncRNA upstream 24205 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008872 lncRNA upstream 251262 43455469 ~ 43457258 (-) True XLOC_004373
TCONS_00008873 lncRNA upstream 257188 43461395 ~ 43466520 (-) True XLOC_004374
TCONS_00008874 lncRNA upstream 509503 43713710 ~ 43716304 (-) True XLOC_004376
TCONS_00008292 lncRNA upstream 896132 44100339 ~ 44108669 (-) False XLOC_004380
TCONS_00008284 mRNA downstream 541 43135198 ~ 43200994 (-) False XLOC_004370
TCONS_00008285 mRNA downstream 63823 43135199 ~ 43137712 (-) False XLOC_004370
TCONS_00008283 mRNA downstream 97060 43102421 ~ 43104475 (-) True XLOC_004369
TCONS_00008282 mRNA downstream 199273 42933823 ~ 43002262 (-) False XLOC_004367
TCONS_00008281 mRNA downstream 199273 42933823 ~ 43002262 (-) True XLOC_004367
TCONS_00008288 mRNA upstream 265969 43470176 ~ 43473824 (-) True XLOC_004375
TCONS_00008289 mRNA upstream 743884 43948091 ~ 43948885 (-) True XLOC_004377
TCONS_00008290 mRNA upstream 815637 44019844 ~ 44030962 (-) True XLOC_004378
TCONS_00008291 mRNA upstream 826522 44030729 ~ 44037692 (-) True XLOC_004379
TCONS_00008296 mRNA upstream 940405 44144612 ~ 44163164 (-) True XLOC_004382
TCONS_00008250 other downstream 1826409 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 2117172 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 2505399 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 3018739 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 4111544 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 919120 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 1132950 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 1402644 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 2227326 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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