RNA id: TCONS_00008873



Basic Information


Item Value
RNA id TCONS_00008873
length 4349
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_004374
representative True

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43461395 ~ 43466520 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ctttaattgggGGTGGATCGCTGTCAGACTTCTGCATTGATTAGATCTGCACATCTTTGATTAAAATGCCAGTCTGAGCGGTTTCTATTGGCCGGTAACTGAAGCCAGGGCTGTTTTAGTCAACAATCAGGTTTGTTTTCGTTCTGCAAACTGACCCGTGAGGGATTAAAGTGCGACATGCGCAGATCTGATGGAACTCGGGTTTCTTTTTGAGCTCAATACTGACCTTAGTCGAGGATCAATATACAGGACAATACAAGCGGATGGACCTCAATCATGAAAAATGGATTCTGCTTGTGTTTCATTCATGATCAAACACAAGATCTCCTCTGACTAAGTCACTGGAGCTGCTGATGATGACGATTTGCAATATACAGGCTGGATTCAGCAAATAACCGGCGCACAAACAACAAAGTGACTTGAGAGATGAAATCGAACAGCCTCaggtgttgttttatttttcggaagataaaaaacaaaacatgtttacgtCCGTGTGTTTTTTCCTGCTCATATATTTGTTTCCCTCCATTCAGACACAAAGAGTAAAACTATGAAAGCTGTAGCTGACGATTGAGAATCTGCAGATACACGCTGGAGATATACTGACATTGACTTGTGTCTATTTGTTTTGGTGGAGATGGTCAATGATGATCCTTTTTTCGTTTGTTTTCAGAGATGAACATTGAAAGGCTGGATTTGTATATCCAATTTGGGATTAGTGGAGTTCCTCAGCTTCTTATTGAGTTAATGAAGTGAAGTTTCTTCAGCATTTGGCGGTGAAGTAAAGAGCGCTGTGGatatttttgtaaaattgtaCAAGAAACTGTTTGGAGATGCAAATGTTCGGCCTGTTGAAGTATTTGATACCAGTAATGTATTAAAGCTAGCTGTAACAATGCTGTCGCTCGGTGGATTTTTAATATatcatgtttttcttttataagCTAAGCGTTTTTGGAGAACCAATGTCTTTTAGAGAGAAAACACTGGAGCATGATGCCAGATCAGCCTCAAAAAATATATGTctacaaaatataatttatgcATCTGcaacaatttacatttacaaaatccaatttcgTAAGTTCAAAATGTGAcccgtaaatacacaaatccaattcgtaaacgcGATTCAATAACATGcacatccaattcgtaaattcaaaacgtgATTTGTAAAAGTTTAATTGACAAAtttaaacacaattcataaatacacatccgattcgtaaattcaaagcacAATTGAAAAACACAAATCTAATCTGTAATTTCAAAACGTGATTcgtaaataaacaaatccaacttgtaagttcaaaacacgatttataaacacaaatgcaattcgtaaatttaaaacttgATTCGTAAACACACAAATcaaattcgtaaatacacaaatacaattcataaattgaACATGTGATTCGTTAATACAGAAATttaattcgtaagttcaaaatgCGATGCAAAAACccatccaatttgtaaattcaaaatgtgATTCGTTAATACAGAAATttaattcgtaagttcaaaacgcGATGCAAAAACccatccaatttgtaaattcaaaatgtgATTCGTTAATACagaaatccaattcgtaaattaaaaacacatttcataaatacacaaatttaatttgtaaatccAAAGCACGATTCGTAAAGACACACCCAATTCATAAAATCAAAATGTGAattgtaaatgcacaaatccaattcataatatTCAAAAcgtaatttgtaaataaatcaaattcataaatttaaaacataattcgtaaatgcacaaatccaattcacaaATTCATAACGTGAatcgtaaatgcacaaatccaattcgtaatatTCAAAACGTAGTTCGTAAATacatccaattcataaattcaaaacgtgatttgtaaatacacaaacttgattcataaattcaaaaagtaattcgtaaatacacaaatccaattcataaatttatgACGTGaatcataaatgcgcaaatccaattcataatatTCCAAACGTAATtcgtaaaaaaaatccaattcataaattcaaaatgtgattcgtaaatgcacaaatccaattcgttaattaaaaacaattcataaatacacaaatccaactgatttgatggaaatattttacatttttacttgtgaatccacaaattgtgtgttgtatttatgaattctgttttaaattgacaaattgagttttgtaaatgtgaattgtgccgAGCATGTTTGAATTAaagtttattaatgcattatttttaaGACTGATCTGGCTGCATATGAAGATGCGAGCTGTGCGTTATGCAAGAATGAATCACGGTGTGTTTGTGTAGCTGCTGTacagcgtgtgcgtgtgtgtgtgtgtgtatgaaaatgGGCCGTACTTTAACTTTACCTGTGGTTTATCACAGAAGTAGACGGACTGATCTAGAACCTGTGTGagacttttatttgatttttttctgtcTCAAGCTCGTCTTCTGGTGAAGCATTTGTCATCTTCAGTTTCTTGATCAATAAAAGTTGGTATTCATTCTGTGCATTTGGTCTGTTGTTGTGCGTCTGAACAGCAGGAGGCGCTGTtgcatcacaaaaacaaacgCTTTGATTTCAGCAGCTCGAGATATTTATTAATATCCATTTATTAATCTAGAATTTGGTTTATTTTCGTTTTGCATCATTTACTAATTATTGTTATCTACTAATGAGGGTGATGCAGTCTGCTTCTGGAGATAGACACTCTTTAATTAACTCTCCATATGAACAGGCTTCTTGAATAATAACTCATATGTTGTGAGCTCCAGGGTTGTTAATTAATTGTCTATACTTTTGTCGAATGCTTCTGTTCATATTAATTCAGCCTATTTgtaaaacagttttgtttaataATAGATTATTAATGTGTGCTTATTTTTTATCATATTGTCTGTCCTGAACTGAATGATGAATCTCCACTTCTGCAGCATTTTATATTGTagggaaaaaaagaaatagaaattGGAAGCCTGacttttttcatttggtttatgcAAATTAGTACATTTAATAAAATGGATCATTTGCATATTTCCATGTCTTACAAAACTTgtactacaaaataaaaaagtttgcaATTGTAAATAGAATTTTACtttgcagaaaaaaagaaacaataattcTGAGCCCGACTTCAGATTGTTGTATAGCAATGTATGcaaatttgcacattttttaaaataatcttatttgcatatttacataATTTAGAAAACCgttaatacaaaaaaagtttgcaaTTTTTCAGATAATTTTAGTTTGCTTAAAAGAAGAACAAGAATTatgctcatttgcatatttagttAGTACAAAAAAGTTTGCAATTCCTAATCTAATCATTGAACTGGGGAAATATGGATGTTACAGGTTTTTTTACTCTAGCCATATGCAATATCTTGTCTCAATggagaaaaactacattacccatgattctGTGCAATTCTACTAATCGGAGAGTTCCATTGAGGCAATGTATAATAAACTCCGCCCACATTATGAAGCACCATAAATGATGTAAAAAACAAACTggaaaatatgaacacaacaactttaaatgaatattttcttatttattattattttttggcaaTGCATCATGGGATTGTAGTTCCCTCTTTAAAGCCattatgtttgttgtatttttgtatttctatttgctTCAAATCACAGTTGATTctcctattatttattttaatttatttccagttgttgtaaaaaaacaacaacaacaaaaaaacagtaaAGGTATGTTGAATCTGACTTCAtcaaatgttcagatttttgtgcaagatatgtatgcaaattagctcatattttaataaagtggcccatttgtatttacattttttaaagaacttgtaatacaaaaaaagtttataattcctaaaatagTTTTAGttcacagaagaagaagaaacaagcATTCTGAGCCCGCCTTCAGATTTTGTGCTATAGGAATGTATGCAAATTTACACGTTATTTAAATAGTCTCATTTGAATAGTTACATACTGTATTTGGGGGAAAAATGCAATCCTCAGTGGAATTTAAGTTTGCAGAAAAAAGAAACGAATTCTGAGGCTGACTTCAGATTGTTGTGCTAGCAATGTATGCAAATTTGCATGTTTTATTAAGTagtctaatttgcatatttagttAATACAAAAAagtgtatttgcatatttaagaaAATCTGTAatgaaaaaaagttcacaattcttaatttaattttagttcacAGAAAAAGAAAGACTATTGAGCCCCTCTTTAGATTGTTGTGCTAGgaatgtatgcaaa

Function


GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0048666 neuron development biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0048699 generation of neurons biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00008872 lncRNA downstream 4137 43455469 ~ 43457258 (-) True XLOC_004373
TCONS_00008287 lncRNA downstream 231031 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008871 lncRNA downstream 257188 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008870 lncRNA downstream 398409 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008869 lncRNA downstream 643691 42809514 ~ 42817704 (-) True XLOC_004365
TCONS_00008874 lncRNA upstream 247190 43713710 ~ 43716304 (-) True XLOC_004376
TCONS_00008292 lncRNA upstream 633819 44100339 ~ 44108669 (-) False XLOC_004380
TCONS_00008293 lncRNA upstream 633819 44100339 ~ 44116448 (-) False XLOC_004380
TCONS_00008294 lncRNA upstream 633819 44100339 ~ 44120354 (-) True XLOC_004380
TCONS_00008875 lncRNA upstream 918294 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008286 mRNA downstream 235140 43146352 ~ 43226255 (-) True XLOC_004370
TCONS_00008284 mRNA downstream 260401 43135198 ~ 43200994 (-) False XLOC_004370
TCONS_00008285 mRNA downstream 323683 43135199 ~ 43137712 (-) False XLOC_004370
TCONS_00008283 mRNA downstream 356920 43102421 ~ 43104475 (-) True XLOC_004369
TCONS_00008281 mRNA downstream 459133 42933823 ~ 43002262 (-) True XLOC_004367
TCONS_00008288 mRNA upstream 3656 43470176 ~ 43473824 (-) True XLOC_004375
TCONS_00008289 mRNA upstream 481571 43948091 ~ 43948885 (-) True XLOC_004377
TCONS_00008290 mRNA upstream 553324 44019844 ~ 44030962 (-) True XLOC_004378
TCONS_00008291 mRNA upstream 564209 44030729 ~ 44037692 (-) True XLOC_004379
TCONS_00008296 mRNA upstream 678092 44144612 ~ 44163164 (-) True XLOC_004382
TCONS_00008250 other downstream 2086269 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 2377032 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 2765259 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 3278599 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 4371404 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 656807 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 870637 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 1140331 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 1965013 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile


Expression of TCONS_00008873 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.
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Expression of TCONS_00008873 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU495627 True 1823 lncRNA 0.38 1 CI01000306 1082547 ~ 1084369 (-)