RNA id: TCONS_00008874


Basic Information

Item Value
RNA id TCONS_00008874
length 2427
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id XLOC_004376
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43713710 ~ 43716304 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACAACAATACtgtatttcattaaaaatgtacaaaatatatcTACATGAAACAGCTGAAACATATTTCTGTATACCGAGTTTAAAAGTCCAAGATAATTGGTTGGGTTCAGAGCGTTGCGATCTCTCGGGAGCGCCGTTACGTTTCTTTGATTACatcaataaatcaaaacaaagcaAGACTTTCAAGTGTCATGTTTTACATATCATCATAATATCCTATATGCATATTCACTTTGGAGCCTCTCTTTTGTCTAGTAGAAATGAGCAGAGGACgtttaatattacatttcatttacagCATATACAAAACCTCTTGGTATCCATTGGAGAAGACGCAAAAGATTCAGTCCTGTTCTGCTAATAATAAATCCTGCATTCGCTTGTGCGCAGCGAGGCACTTGTTCCTGCGTTCGCGTCATCAGAAGTCGTATAAAAATACAGGACCGTCGCTAATCAAACTCTCCGTCTGTCTGCTCGTGTGTGCTGTACATACACTGGTCTAAGGCAAAGTATGGCTTCTTGAAGACAACAAAAAGACTCTACCAAAGTCTCGACTAACACTATACAGGATAATACGctcttaaaaagcatttaaaaaaacgtTTATGCATCATTTTGTCCTTGCATGAAGTCActcaggtttttttttcctttcgcaCATTGTATCTGAAATCGCCCCCTGTACCCTTAATAGTGCACTCTTTGTAGTGCTGTCCGAAATAATAGTGGACGCTCCGAAGAGCAATCAATCCAACAATGCACTGCAATAATAAGTGTACAACCCATGTGCACTCAACAGCTAGGAAtgaagcctcattcacactagcatccactttgtagctgcctgtttcTCTGGGTCTGAGCACAGAGAATACAACCAGCCTCTGcaggagctgagagaggatcacgtgagctctaccggtgctccaattggccgacgctcaagaaagttgcttttcatttgcataaagttggaggattctcaactttgtcacgCCCAGCTGATCGCCAACGGTTGCTCTTGCTCGCATAGACGGAGGTCGCCGGAAGTCGCTCACTCTCTGTTGAATTGATATGAACGGTCGCTTGTGGCTTGGCCGCTGTGAGTCGCTCGTAGTGTGTATGAGGATTGAGAGTTTGCACACCAAATTAACTTTATAacttgttattcacagcatatgcaggttctgttcactaaagcagCCGTCATTGGCATGCTACGTGCACGAGTTCTCTGTAGCTCGGGGTCAGCTCACGTGTAATTTTGCGACCGCAAATAAATCATTACATGAGCAGGGCCAGAGCAAgttgaactgccgctctaggcagaggatgaTCACGCcgcccaatgtgaaaacgaaagtgactggTTATTAATATAAAGTGAGGTGTCGCGAACTTCTATTCtaccgccctatgcgcggatataactgaggacgcgcgggtgctgaggcagggagggaggtgtcgcggacaccgcgctctctattctgccgccatATGCGCGGATaaaactgaggacgcgcgggtgctgaggcaGGGAGGGAGATGTCGCGGACaccgcgctctctattctgccgccatATGCGCGGATaaaactgaggacacgcgggtgctgatggaggtgtcgctgacgccgccctctctattctgtcaccTATGCGCCAATAtatctgagggcgcgggtggtgagggaggtgtcgcggacgctgccctctatactgccgccctaggcagccgcctaggttgcctctatggacgcgccggccctgtacatgagacagaaatgacatttctgggtgaattataccttataaatacagtatgtgacactttttatGCCATTTGAGGGTGTTCATGTTCCTGTGCGGCCGCCTTtaagcttctctcctgaccttgaaaataaaaTTGGCTGAATCGAAGAAAAGCTAAATTAAGATCGTGTGtcgggtcgaatcgagatcgtgatcttttttcgattaattgtgcagccctagttgcaacccatatcaaacacacctgcctgtaattatcaagtgctgttcaggtcctaattaactgGTTCGGGTGTGTCCTGGTACGCTGGTCCCCGCCtcagaatgagtgagttttagctacttgtacattaaggaagcgttcagaaaaaacaaaacaccttcgaagaaactcgacacatacataaacacctgctgccagctagtgtttctgaagtgttattgcagagcaacacaaacagcgcgcacTAATcgagtataaatgcacgactatgcCCAGGGCAGGCGCtgtgggtcacgctgatcactccACGCAGacgtataaaccagccttaagccGAAAGAAAGTTAATAAATGAGTTAGTCACTTTaagggtttttttttgtttcagttggctacaaaacaaaccactgttatacaatggcttgc

Function

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0051179 localization biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0030133 transport vesicle cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008873 lncRNA downstream 247190 43461395 ~ 43466520 (-) True XLOC_004374
TCONS_00008872 lncRNA downstream 256452 43455469 ~ 43457258 (-) True XLOC_004373
TCONS_00008287 lncRNA downstream 483346 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008871 lncRNA downstream 509503 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008870 lncRNA downstream 650724 43061882 ~ 43062986 (-) True XLOC_004368
TCONS_00008292 lncRNA upstream 384035 44100339 ~ 44108669 (-) False XLOC_004380
TCONS_00008293 lncRNA upstream 384035 44100339 ~ 44116448 (-) False XLOC_004380
TCONS_00008294 lncRNA upstream 384035 44100339 ~ 44120354 (-) True XLOC_004380
TCONS_00008875 lncRNA upstream 668510 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008876 lncRNA upstream 731391 44447695 ~ 44450349 (-) True XLOC_004389
TCONS_00008288 mRNA downstream 239886 43470176 ~ 43473824 (-) True XLOC_004375
TCONS_00008286 mRNA downstream 487455 43146352 ~ 43226255 (-) True XLOC_004370
TCONS_00008284 mRNA downstream 512716 43135198 ~ 43200994 (-) False XLOC_004370
TCONS_00008285 mRNA downstream 575998 43135199 ~ 43137712 (-) False XLOC_004370
TCONS_00008283 mRNA downstream 609235 43102421 ~ 43104475 (-) True XLOC_004369
TCONS_00008289 mRNA upstream 231787 43948091 ~ 43948885 (-) True XLOC_004377
TCONS_00008290 mRNA upstream 303540 44019844 ~ 44030962 (-) True XLOC_004378
TCONS_00008291 mRNA upstream 314425 44030729 ~ 44037692 (-) True XLOC_004379
TCONS_00008296 mRNA upstream 428308 44144612 ~ 44163164 (-) True XLOC_004382
TCONS_00008298 mRNA upstream 462256 44178560 ~ 44194132 (-) False XLOC_004383
TCONS_00008250 other downstream 2338584 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 2629347 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3017574 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 3530914 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 4623719 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 407023 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 620853 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 890547 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 1715229 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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