RNA id: TCONS_00008292


Basic Information

Item Value
RNA id TCONS_00008292
length 2000
lncRNA type lincRNA
GC content 0.46
exon number 5
gene id XLOC_004380
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44100339 ~ 44120354 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTGTTCATGTCCATGATAaaagtataaacaaacaaacaaacaaacaaacaaacaaacagtgttACACATTCTGTCCTGAACACACTCTGCAGTGTGCATCTAGTGAGCAGTGAGCAAGTGCTCCATCCTGAACAcagccggtgtgtgtgtgtttaagtgtgtatgGCTCCTCCCACTGAGGGCAGGGCTTTATCAGCTATAGATCAGCTTTctctcaccacacacacacacatacacacacacacacacacacactcagggagGAGTCGTGTGCTGGTGTCCGAGGCTCATTCAGGATGAAATGTGTGTGAAAGCTTGAGGAGATGTTGAGGAAACTGGTGTGCCGGAGGATCTGTGCATaTAAGAACATTGATGATGAAGACTCAGTGGATGGAGGTCGATCCTCATCATCCTCTAAAGGAGCTTCAGTACGGAGAACAGGATCCACACGCAGACCCAGCTCCGCCTCCAGCAGACCAAGCTCCGCCTCCAGGAGACCAAGCTCTGGTAAAGAGAGCTGTGGTGCCGGAGCTGTGGATGAAGAAGACTTCATTCGTGCCTTTGAAGATGTGCCGACTGTACAGATATACTCAGCCCGAGAGCTGGAAGACTCCATCAATAAGGTCCGGGAGATTCTGTCTGATGAAAAACACGACTGGGAGCAGAGAGTGGCCGCTCTGAAGAAGGTTCGCTCTCTGCTGTTGGCCGGCGCGGGCGATTATGATGGTTTTTGTCATCATTTGCGGCAGCTGGACGCAGCTTTCAAGCTGTCGGCTAAAGATCTGCGCTCTCAGGTGGTGCGCGAGGCCTGCATAACACTCGGGTATGTGTGTGTACACTctataaaatgctgggtttcacacaattggtttgtgtggagtttgcatgttctccccgtgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgcgctataggggaactgatgaactaaattgatgagtgtgtatgggtgtttcccagttctgggttgcagctggaagggcatccgctttgtaaaacatatgctaaaatagttggtggttcattctgctgtggcgacccttcttgaataaagggactaagctgaaggaaaatgaatgatcttTATTTACAAATGCCTAGTTATAGATAAGTTTGCTTTGTTCATACATAATAAAAGTCTTCTTTTGTGATGATTTCCTGATATCTGCTCAGCTTTAGCTCCATCTGTAGAGTTTAACACCGCTGCAGAGCCACTGCTGACAGATGCTGACAGACTCACTTTAATGAAAACAGCCAATTACTCTAAGTGTTCTGCTTTTAAACACTGGACACGTTccaacactgcacacacacacatacacacacacgcacgcacattcTACTGATGGGCTGTGTTTCAAACTGTGCTTCACCGTCTACATAGTCAACTACCTTGAAAGGCGACATCACTGCAgaaataaaattaacataaataaaattaaaataaatattgcatttaaaaaagagacaaaaaatgtatttatagtcAGAATTATGCAAAGATTATTACTTAAAGCTTTAATTAGATTAAAGATACACTTAATAAGGGCAGCAccgtggctcagtagttagcactgtggcctcacagcaagaaggttgctggtttgagtcccggctgggtctgttggctttcctgtgtggagtttgaatgttctccccgtgttggcatgggtttccttcgggtgctccggtttcccccacagtccaaacacatgcactataggggcactgatgaactaaactggtcgtagtgtatgagtgtgtgaatgagtgtgtatgggtgtttcccagttctgggatgcagctggaagggcatccgctgtgtaaaacatatgctggaatagttggcggttcattacgctgtggcaacccctgatgaataaagggactaagccgaagaaaaatgaatgaatgaatgaatacacacaATAATGGTTAGAGtagggtgtttt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0061387 regulation of extent of cell growth biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0001755 neural crest cell migration biological_process
GO:0006935 chemotaxis biological_process
GO:0050919 negative chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030182 neuron differentiation biological_process
GO:1990138 neuron projection extension biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:1902667 regulation of axon guidance biological_process
GO:0120035 regulation of plasma membrane bounded cell projection organization biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0010975 regulation of neuron projection development biological_process
GO:0010977 negative regulation of neuron projection development biological_process
GO:0010721 negative regulation of cell development biological_process
GO:0031344 regulation of cell projection organization biological_process
GO:0031345 negative regulation of cell projection organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048588 developmental cell growth biological_process
GO:0001558 regulation of cell growth biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0010769 regulation of cell morphogenesis involved in differentiation biological_process
GO:0010771 negative regulation of cell morphogenesis involved in differentiation biological_process
GO:0048638 regulation of developmental growth biological_process
GO:0048640 negative regulation of developmental growth biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0050770 regulation of axonogenesis biological_process
GO:0050771 negative regulation of axonogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0030030 cell projection organization biological_process
GO:0045926 negative regulation of growth biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0032502 developmental process biological_process
GO:0048675 axon extension biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0042330 taxis biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0008361 regulation of cell size biological_process
GO:0031175 neuron projection development biological_process
GO:0016049 cell growth biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0051961 negative regulation of nervous system development biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194920

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008874 lncRNA downstream 384035 43713710 ~ 43716304 (-) True XLOC_004376
TCONS_00008873 lncRNA downstream 633819 43461395 ~ 43466520 (-) True XLOC_004374
TCONS_00008872 lncRNA downstream 643081 43455469 ~ 43457258 (-) True XLOC_004373
TCONS_00008287 lncRNA downstream 869975 43228412 ~ 43230364 (-) True XLOC_004372
TCONS_00008871 lncRNA downstream 896132 43201535 ~ 43204207 (-) True XLOC_004371
TCONS_00008875 lncRNA upstream 276145 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008876 lncRNA upstream 339026 44447695 ~ 44450349 (-) True XLOC_004389
TCONS_00008877 lncRNA upstream 342571 44451240 ~ 44451660 (-) True XLOC_004390
TCONS_00008878 lncRNA upstream 414137 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008314 lncRNA upstream 420901 44529570 ~ 44530479 (-) True XLOC_004394
TCONS_00008291 mRNA downstream 62647 44030729 ~ 44037692 (-) True XLOC_004379
TCONS_00008290 mRNA downstream 69377 44019844 ~ 44030962 (-) True XLOC_004378
TCONS_00008289 mRNA downstream 151454 43948091 ~ 43948885 (-) True XLOC_004377
TCONS_00008288 mRNA downstream 626515 43470176 ~ 43473824 (-) True XLOC_004375
TCONS_00008286 mRNA downstream 874084 43146352 ~ 43226255 (-) True XLOC_004370
TCONS_00008296 mRNA upstream 35943 44144612 ~ 44163164 (-) True XLOC_004382
TCONS_00008298 mRNA upstream 69891 44178560 ~ 44194132 (-) False XLOC_004383
TCONS_00008297 mRNA upstream 69891 44178560 ~ 44194132 (-) False XLOC_004383
TCONS_00008299 mRNA upstream 69891 44178560 ~ 44214767 (-) True XLOC_004383
TCONS_00008302 mRNA upstream 157053 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008250 other downstream 2725213 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3015976 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3404203 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008222 other downstream 3917543 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008210 other downstream 5010348 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008295 other upstream 14658 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008303 other upstream 228488 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008317 other upstream 498182 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 1322864 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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