RNA id: TCONS_00008876


Basic Information

Item Value
RNA id TCONS_00008876
length 2499
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_004389
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44447695 ~ 44450349 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCTGAATTACAAATATCAAGTGCTCGTCCTTCGAATATACATGAACGTGTTTTAATTGAAAACAAGTAACTGGTTATTTTGTTTTGGTATAATTTTCCTTAGATGAAATAAACCTACATACCCATATGTACATGAATCACACACATTAAATGAGTCAATAAAACTGaacatgttttttgagatatggtTAAAAGTCTTTTTATTGGTTACAATATCAGTGTATGGCAGCATCATCACCATGTTACTTTACAAATACCAAAAAAGTTGAGaaacaaaatgttattaaaaatgattatttgaAAATATGGCACTGTAAAGGTACACAAGGCACCACACTCCTGCTTTTAATGgctcaaataaaacaaactcATGTAAGATACAATTGAGCCAAAAGTATATTGTGAATACTTAAAGCATCAGGGTTCAGGCAAGTAATTCTAACATGCTCTGAGTTTGAGTGGTTTGGCTTGTTGAACATTTGGAAATATTGTCAAAATCTAAACTCATGTTAAAATTGTTGGTTTTGATTGGTTCAGAACCAACCACTGAAACCTTCAACATGTTTATAACAAAACATCCACAGAAATAATCACTGATTAGCAATCTTGCAACCTCTACAGTCCTAACCATAGACATCTGACTTAAATCTAACCAATACTTATAACACCAGCAGATAAATTCCTGTTTAAATTGTTGACTTAAAAGTGAGACATAATTACTTAAAACGCATCCCTTTTCACAGTTAATCATCCCAAAAcatcataaaaacaataataataaaaaaactgatctTTATGGTGTGTTAATCAGCTCAGAGCAATGCAAGGGTGTTTATTtacgcaaaaaaacaaaaagcatctTCATACGGTCAAAGGACGAAAATACACTTAATACCTCAAAATAATTTCAAGCTGCTTTCCGATTCCCTTTTATATAAAAATGCGAAGAGAAAGATTGTAAATGCTGTTCACAGTTATATGAGGTGTTAAGAGCGTCAACAATGgcacaaatattattttttaattcaggcTTGTTAAGGTGAAAGAGCTGGACTCAAACACCGTTTCTATTTGAAAAACAGAGATTTGTTAGAACCGATGGcacttatacatatatatatatggcgaaAGTGAGTAAACGGCTTCATCGCTCTTTTCtataattattatacaaaaatTAATCCAAATAGAGTGACTCTGATTCATCATCCTGGCCAGGTAGTGTTCTTCATTTCCACCCGTATCACCATTCAGATCAATCCAATTTAGCTTAATATAGAAAACCAAAAATGTATACTGTTTACCGTAGTGCTGTTAAACGATCAACTCGCAACTaatcacaaaataaaagtttgtattggAATGAGTGTAcggtgtatatttattatgtatatagaATTGTACACATctatctacactctcagaaataaaggtatgtgagcgtcttTCTGTCGGTctatagctgaagtcagaattattagccccccgtttattttttccccaatttgtgtttaacagaaaagaacacatttcaacatttctaatcataatagtgttaataactcatctctaataactggatttattttatctattgtcatggatgacagcacataatattaaactagatattcttcagacactagtgttcagcttaaagtgacatttaaaggcttcactagggtaattaggttaactaggcaggttagggtaattaggcaagttattatgtaCCGATTgtttgttcggtagactatcgagaaaaaaatattgcttaaaggggctaataattttgtccttaaaatggtgtttagaaaattaaaaactgcttttattttagccgaaataaaacaaataaaggcccgtgcacactggGATGATTTTTGCTCGGGTTTTCTGTTGACGTTTAACCCCTTGTGattaaataaagggcgtcaatgtgattgtgcacaccaacgcacaaaacggcaggcgcaaaagcgtaatttttaaagaaacgcctcatgctcatttttttttttttttttacgccacGTAAAAACCTcctccaatcagattggcacaTTTGTTTGTCACTGGTGAACAATAGTCATTTCATCATCGCTAGAGctagagctgctgcttgaaccatccatgcttgtacGAATCGCTAGTAACTTTAACAAGTTATAAGAGGGtatcagaagcttaaagttgtgtcgcactcttctgctcgacgccagtgaaaaatcgcttgggtttgaatccagaaAAACGTCTCGAAAATGCTGACaataaacgcaaatgaaaagcatcccaGTGTACAGctttaagactttctccagaagaaaaaatattatcagacataccgtgaaaatttcctgaatctaaaaaataataataaattcaaaggagggctaaaaattctgacttcaactctatgtatctatccatccatccatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008875 lncRNA downstream 61946 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008294 lncRNA downstream 327341 44100339 ~ 44120354 (-) True XLOC_004380
TCONS_00008293 lncRNA downstream 331247 44100339 ~ 44116448 (-) False XLOC_004380
TCONS_00008292 lncRNA downstream 339026 44100339 ~ 44108669 (-) False XLOC_004380
TCONS_00008874 lncRNA downstream 731391 43713710 ~ 43716304 (-) True XLOC_004376
TCONS_00008877 lncRNA upstream 891 44451240 ~ 44451660 (-) True XLOC_004390
TCONS_00008878 lncRNA upstream 72457 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008314 lncRNA upstream 79221 44529570 ~ 44530479 (-) True XLOC_004394
TCONS_00008879 lncRNA upstream 151512 44601861 ~ 44603615 (-) False XLOC_004395
TCONS_00008880 lncRNA upstream 151512 44601861 ~ 44603625 (-) False XLOC_004395
TCONS_00008305 mRNA downstream 37839 44400864 ~ 44409856 (-) True XLOC_004388
TCONS_00008304 mRNA downstream 100108 44340212 ~ 44347587 (-) True XLOC_004386
TCONS_00008302 mRNA downstream 171009 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008301 mRNA downstream 171009 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008300 mRNA downstream 171009 44265722 ~ 44276686 (-) True XLOC_004384
TCONS_00008307 mRNA upstream 1884 44452233 ~ 44484952 (-) False XLOC_004391
TCONS_00008306 mRNA upstream 1884 44452233 ~ 44484952 (-) False XLOC_004391
TCONS_00008308 mRNA upstream 1912 44452261 ~ 44485700 (-) False XLOC_004391
TCONS_00008309 mRNA upstream 24022 44474371 ~ 44485762 (-) False XLOC_004391
TCONS_00008310 mRNA upstream 24063 44474412 ~ 44485700 (-) True XLOC_004391
TCONS_00008303 other downstream 108475 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 324237 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3072569 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3363332 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3751559 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008317 other upstream 156502 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 981184 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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