RNA id: TCONS_00008306



Basic Information


Item Value
RNA id TCONS_00008306
length 2918
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_004391
representative False

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44452233 ~ 44485762 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTTTCAGCTCTAATGTGAAGGCGTTGAAGTTAAGATTAACATAACAGTGTGGAAATGGAGCAGTTAGATCCCTCTCCGTTAAAGCGCTTCGTTCTGGCCAAGAAGAAGATCAGCGAAGTGTTCGAGCAGCTCCTAGTTTACGTTCAGGAGGGTTGCGAGTTTGTAAAAGAAACCTGTGCCAATGAGTCGTTGGAGAATATTGCCAACAAAGACCAGTTGGATGAAATCGAATCGTACACCAGCAAACTGTCCATCATTCAGGAGGTGTTGGCTCGCAGACATATGAAGGTGGCTTTCTTCGGCAGAACAAGCAATGGTAAAAGCACCGTCATCAACGCTATGCTGCGTGACCGTGTGCTGCCCAGCGGCATCGGACACACGACTAACTGCTTTCTGAGTGTGGAGGGAACAGATGAGGACAAGGCCTTTCTGAAGACTGAAGGCTCCGAGGAGGAGAAAAGCATCAAGACAGTAAATCAGCTGGCTCACGCTCTGCATATGGACGAGAGTCTGGACGCCGGCTGTCTGGTCAAAGTTTTCTGGCCCAAAACGAAGTGTGCTCTGCTCAGAGACGACCTGGTTCTGGTGGACAGTCCTGGAACTGACGTGACCACAGAGCTGGACAGCTGGATTGATAAGTTCTGTCTGGACGCTGATGTGTTTGTGTTGGTGGCGAACTCTGAATCCACACTAATGAACACGGAGAAGCATTTCTTCCACAAGGTCAATGAAAAACTTTCCAAGCCCAACATCTTCATCTTGAACAATCGCTGGGACGCTTCTGCTGCCGAACCCGAATACATGGAGGACGTGCGCAAGCAGCACACGGACCGGTGTGTGAACTTCCTGGTGGAGGAGCTGAAGGTGGTGGATCGCGCTCAGGCACCGAACCGCATTTTCTTTGTGTCGGCGAAGGAGGTGCTGAACTCGCGGATGCAGCGGGCGCAGGGTATGCCAGAGACGGgaggCGCTCTCGCTGAGGGGTTTCAGGACCGACTGAAGGAGTTCCAGAACTTTGAGAGATCCTTTGAGGAGTGTATCTCGCATTCAGCAGTGAAAACAAAGTTTGAGCAGCACACAATCAGAGCAAAGCAGATCACAGAAACAGTCAAAGACATCATGGATCAAATCAACATCACCGCCGCAGAAAAGAGGGTTGTTTCCCTGGAGGAGCGAGAGTATCTGATCGACCGGCTGGATTTCGTTCGCAATCAACTCAACCTGCTTATCCAAGACATCAAGAAGAAAATCAAGGCCATCACGGAGGAGGTGGAAAACAAGGTGTCAAACGCCATGGCGGAGGAGATCTGTCGTCTGTCTGTGATCATAGACGAGTTTCGGTCAGATTTCCACCCGTCGCCTCAAATGCTCAAAATGTACAAATCTGATCTGCTCAGCCATATTGAGCAGGGCATGGGCAAGAATCTGGCTTTCCGCTGTTCTGATGCTGTAAACGCCTCTGTTCAGTGTTCTCAGCAAGACATGATCGAGTGTCTGAAGCCTCTGCTGCCCTCTGCTGCCCAGACGCAGCTCCACATGCTCATCCCCAGCCGCAAGTTTGAGCTCAGCTACGACCTGAACTGCGCCACGCTCTGCTCAGACTTCCAGGAGAACATCGAGTTCCAGTTCTCCTTAGGCTGGTCTGCGCTGGTGCACAGATTCCTCGGTCCCGTCAACGCCAAACGAGCCCTGATGCTGGTGGACCAGAACCTACAGCTGACAGCACCAACCACCCCTACAGCCCCAGCGGTGGTTCAGTCCCAGAACTCCAGAGCTCTGGGTCAGAATCAGGCCTCAGTGACCCAGGAGGAGCTCATGTTGACCATGGTGAATAACCTGGCCTCGGTCACCTCACGCACGTCTATGAGCGTGATCATTGTTGGAGGAGTGGTGTGGCGTACAGTCGGCTGGCGTCTGATTGCTCTCTCCATGAGTATGTATGGTCTGCTGTACCTGTACGAAAGACTCACCTGGACCACCAAAGCCAAGGAAAGAGCCCTGAAGAAGCAGTTTGTTGATTACGCCACCGAGAAACTGCAAATGATCATCAGCTTCACCAGCTCAAACTGCAGCCACCAAGTGCAGCAGGAAATCGCCAGCACGTTCGCCCGACTCTGCCAGCAGGTTGACATTACCCAGAGGGACCTGGAGAGTGACATCCAACGCCTCACTGACAAGATCCAGAAGCTGGAAACCGTACAGAACCGATCCAAAGTGCTCAGACATAAAGCCACAGCTCTGGAAATGCAGCTGGAGGATTTCAGTTCCCAGTATTTGCGTCTTCAGCCCTGATCCTGAGTTCACACGGACGTCGGCTTCATCCAGAGAGTGATGTAACCCGTGAATACAGTACGCCCTCCATTACGCCCTGCTGTTTCGGGAATTCTCCACTCACCAGATGTTGCGAGGAATGTGGAGAGGAACAAATGTTACTTGTAGTTTAACTGTacaatttgtattattaaattaacacTGGTTTCATCTGGGTTGAGGTTTTTCTGAACAGAGATTGAGTTTTGCTGGAACTTAAACAACTTAACACTATGAACATGTCCTATGGAAAACTTGAGAAGAACGACAACATCTGAAAGCTTTTGCTTTTCAGGATCAAcataatgaagttaaactttcaTAAAGCAAACTTTTACCTAGCCTTTTTCACAGAGCCTTTTTTCAGAAACAGAGTTTATGCCATCAGACAGGGAAATCAGATTTTGTAGATTTGCCTTTTGATCACAAAGCCTATTTTCTATATGTTCCTTGGTAGTTTCTAACCCAGTATATCAGTATTCTCTCTATGAACTGTTCTTGTTTCTAAAAACATGTAAATGTGATATGCTGAATTCTAGTGTAAAGCTTCTGctgtgtaattaaaatataatcagataTTATTAAACTGTTGTATGTATTTCATTATT

Function


GO:

id name namespace
GO:0008053 mitochondrial fusion biological_process
GO:0051646 mitochondrion localization biological_process
GO:0031306 intrinsic component of mitochondrial outer membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1553 Predicted to enable GTPase activity. Predicted to be involved in mitochondrial fusion and mitochondrion localization. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be intrinsic component of mitochondrial outer membrane. Orthologous to human MFN1 (mitofusin 1).

Ensembl:

ensembl_id ENSDART00000166674

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00008877 lncRNA downstream 573 44451240 ~ 44451660 (-) True XLOC_004390
TCONS_00008876 lncRNA downstream 1884 44447695 ~ 44450349 (-) True XLOC_004389
TCONS_00008875 lncRNA downstream 66484 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008294 lncRNA downstream 331879 44100339 ~ 44120354 (-) True XLOC_004380
TCONS_00008293 lncRNA downstream 335785 44100339 ~ 44116448 (-) False XLOC_004380
TCONS_00008878 lncRNA upstream 37854 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008314 lncRNA upstream 44618 44529570 ~ 44530479 (-) True XLOC_004394
TCONS_00008879 lncRNA upstream 116909 44601861 ~ 44603615 (-) False XLOC_004395
TCONS_00008880 lncRNA upstream 116909 44601861 ~ 44603625 (-) False XLOC_004395
TCONS_00008881 lncRNA upstream 117292 44602244 ~ 44603615 (-) True XLOC_004395
TCONS_00008305 mRNA downstream 42377 44400864 ~ 44409856 (-) True XLOC_004388
TCONS_00008304 mRNA downstream 104646 44340212 ~ 44347587 (-) True XLOC_004386
TCONS_00008302 mRNA downstream 175547 44265722 ~ 44276686 (-) False XLOC_004384
TCONS_00008311 mRNA upstream 6810 44491762 ~ 44498975 (-) False XLOC_004392
TCONS_00008312 mRNA upstream 10906 44495858 ~ 44499007 (-) True XLOC_004392
TCONS_00008313 mRNA upstream 41940 44526892 ~ 44543082 (-) False XLOC_004394
TCONS_00008315 mRNA upstream 120775 44605727 ~ 44621405 (-) False XLOC_004396
TCONS_00008316 mRNA upstream 121593 44606545 ~ 44622478 (-) False XLOC_004396
TCONS_00008303 other downstream 113013 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 328775 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3077107 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3367870 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3756097 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008317 other upstream 121899 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 946581 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile


Expression of TCONS_00008306 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.
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Expression of TCONS_00008306 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.