RNA id: TCONS_00008312


Basic Information

Item Value
RNA id TCONS_00008312
length 1947
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_004392
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44491762 ~ 44499007 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACCTTTGTTTCAAACGAATCACCTGAGGATTTACAATCATAACAACCGAAAATAAAACCAGAGCTTTAGTAGATTTAATTATCGCACTTTTTTCCTGACGCTGTCTTGCTTAAAGAGAGATGAGTGTACAGGTATGACTTTATACAGctctttataaatgttttagtacTACAAATGAAACATTGTTTATGTAgactaaatgacaaaaaaataagtcAACAAAAGGTATGTGTAATTGCatatctaataataaaaaatgcctttatttttattcatttatttattggttaCAAAATTTATATGTAATCTATAAAAAATCTATGTGCATTTACCAAATGTAATATCACAAATgcttaaaatttaaatttgtaatttatttattgttgtctTTAAGGCGGtatattgttttctgttttgaCATTGCCCATGTTTTTCACCACATCTGAACATGCTAGAGGGAAAATGTCCAAACGTGCAGGGAATAAAATGGATTATTGCTCACCAAAAGAGTTAAGGGTAGTTCTTCTTGGGAAGCATCATTCTGGGAAAACATCGGTTATCAATACAGTTTTACAAAGCAGTGAAACAGCAGTGAAAGTATCCACAGATGTGAAAACAGAAGGATTTATAGACGGCAGGAGAATCTGTCTGATTGAAAGTCCTGGATGGTGGAAAACCTTTAATCTGACTGATTTATCAAACATCTCCAAACAGCAGCTGATTCGCAGGATTTCTCTGATCTCACCGGGACCTCACGCGGTTTTAATCGTGATTCGGGCAGATCGCACTTTCACTGATACTGATGCAGAATTTCTGGAGAAGAGTGTAGATCTGCTGGGTGAAAATATCTGGACTCACTCGCTCATCATCTTTACAAGAGGAGATCTGGTTAAACAAGAAGACATAAAGCGGAAAATCCAGGAATCTGCGCTCAGTCGAATTATTGgcaaatgtgaaaataaatatcaGGTTTTCAATAATATCAACCCTCACGACCAGACCCAAGTCAAAGAGCTGATCGGGAAAATTGAGGGGATTGTTGAGAAAAATGGCAAGCACTTTGATATTGACCAGGAAAAAGTAAGAGAAGTCAAAGAGCAGTTGGAGGAAATTCAGACCAGAGCAATTTCTAGAAAATGCAAAGTAGAGCAGCAGCGGAGTACAGTTCAAGAGAAAGGTAAGTGGACTGTAAAGTGATGTTAAATGTCCTGTGAAACGCTCTGaaatatctttatttaatatatctcaactgaaacatgaagagagtgTGGGACTAATATTAGCTCCcccttttaaaaacagccaatagtgtttagttTTCTCTCGGCTCTGCCAATGAGAGTGGTtaagctcaagcacatcaaatgaaaagttaatgagaagaagggggcggggcatgtctgatactagagagcatttttATTGGTAAGAtggtttgatgagaaactaaagtaatgacaaaaaatcgttgatccatttagaCAGAAGTgacaagctttggatgtttatatcaggtttatgtCACAGATGTAGGGTGGGGAACGGAGCGATGACTTAACTAAAACACAAAATAGGtacttataaattataaaaaacaaaacgtaaaaacagcaaaacaaccaAGAGGGGTGAACGTTAACCAAAACTAAAAGaagtaaagttcgtagacaaacttctgaaagtttaaagttttaagaagtttgaaacaGTTGTAAGTATAGGTGAGCATGTTTTTCTTATGGATTGGCCTGTTGCTTGCTAGGCTGTTGATAGGGGGTTTTGAGTgtttgctaagtggttactagggtgttttgAATGGTTTTTAGcatgttctaagtggttgctaggtgttgctaggcagttaatAGGGTGTTCtaagcggttgctaggtggttgctaaggtcttgctagggTGTTTAGAATGGTTGTTAAAGTAGTGCTAGGT

Function

GO:

id name namespace
GO:0051415 microtubule nucleation by interphase microtubule organizing center biological_process
GO:0051225 spindle assembly biological_process
GO:0031122 cytoplasmic microtubule organization biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005813 centrosome cellular_component
GO:0000923 equatorial microtubule organizing center cellular_component
GO:0000930 gamma-tubulin complex cellular_component
GO:0008274 gamma-tubulin ring complex cellular_component
GO:0043015 gamma-tubulin binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0051011 microtubule minus-end binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160114-38 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to be part of gamma-tubulin complex. Predicted to be active in centrosome and equatorial microtubule organizing center.

Ensembl:

ensembl_id ENSDART00000189976

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008877 lncRNA downstream 44198 44451240 ~ 44451660 (-) True XLOC_004390
TCONS_00008876 lncRNA downstream 45509 44447695 ~ 44450349 (-) True XLOC_004389
TCONS_00008875 lncRNA downstream 110109 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008294 lncRNA downstream 375504 44100339 ~ 44120354 (-) True XLOC_004380
TCONS_00008293 lncRNA downstream 379410 44100339 ~ 44116448 (-) False XLOC_004380
TCONS_00008878 lncRNA upstream 23799 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008314 lncRNA upstream 30563 44529570 ~ 44530479 (-) True XLOC_004394
TCONS_00008879 lncRNA upstream 102854 44601861 ~ 44603615 (-) False XLOC_004395
TCONS_00008880 lncRNA upstream 102854 44601861 ~ 44603625 (-) False XLOC_004395
TCONS_00008881 lncRNA upstream 103237 44602244 ~ 44603615 (-) True XLOC_004395
TCONS_00008309 mRNA downstream 10096 44474371 ~ 44485762 (-) False XLOC_004391
TCONS_00008308 mRNA downstream 10158 44452261 ~ 44485700 (-) False XLOC_004391
TCONS_00008310 mRNA downstream 10158 44474412 ~ 44485700 (-) True XLOC_004391
TCONS_00008307 mRNA downstream 10906 44452233 ~ 44484952 (-) False XLOC_004391
TCONS_00008306 mRNA downstream 10906 44452233 ~ 44484952 (-) False XLOC_004391
TCONS_00008313 mRNA upstream 27885 44526892 ~ 44543082 (-) False XLOC_004394
TCONS_00008315 mRNA upstream 106720 44605727 ~ 44621405 (-) False XLOC_004396
TCONS_00008316 mRNA upstream 107538 44606545 ~ 44622478 (-) False XLOC_004396
TCONS_00008319 mRNA upstream 116060 44615067 ~ 44622250 (-) False XLOC_004396
TCONS_00008320 mRNA upstream 116211 44615218 ~ 44622240 (-) False XLOC_004396
TCONS_00008303 other downstream 156638 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 372400 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3120732 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3411495 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3799722 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008317 other upstream 107844 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 932526 45431533 ~ 45435014 (-) False XLOC_004416

Expression Profile

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