RNA id: TCONS_00008880


Basic Information

Item Value
RNA id TCONS_00008880
length 1308
lncRNA type antisense_over
GC content 0.30
exon number 2
gene id XLOC_004395
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44601861 ~ 44603625 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acaaaatgtgttttaatcGAACAGCTGTACAGATCAGTGTCTCTCATATCCTCTGTCCAGCTGTATACACAGCGGTCCGACTTCCCATCATGCAATGTGTAAACAATCAGTGTGATTTCCCATGTGTGTTGAGGAGGGTCTCGTCCAGATGTAAACGTCACATAAAATGGCCTGAATTGGGCTCTCAGCCCCAGAGCACCAGAAATACAGTGCGGATAACGATGATAtacttttaatatttacaataaacaaaagGAAAATCTTTGGTGTTTCATAAATcagataaaaatataattgtaattaatattttacctATAAAAAACTACtataaaatcatatttattaaaCTAACTAATCAACTAAAACTGCTCAACTGGATTCATGTTTTCAAGTTGTGGTTTTAAGTAGGGATGCATCAATACAGACATCctgatttatataaatattaatagtttCATCAGTGGATCATGTTtaacaattaaatgtaattaatttgtcattaattaaacaatataatataggCTATGTATCAGCATTATATACGCAGATGTCATATCAGCTGTTGAAATccaataatataaacaattgatattttttaaatattattaaaatggctcctaatataatacatatttactattttacctgctttaaaaaaacattcacattAAAGAATTTTATGAGCAAACAAAATTGAAATCTTAGGTGAAAACTATATATGTGAAGTAAAAATATGAGTAAGTATGGAAACTTGTTTCTGTCATGTAGACACATAAAAATGCAGAAATTTGACTTTGCTAATACCGTTGCAAAAGTCAGAACTGTGAGATATAAACTCAGTTCGCATGAGGCAGACATTGGAGATATAAACTTGTAATTGCGGAAAAAAGgagaattataaaatatactCATTCTGTGAAAAGTCAAAATTACGTAAAAATTAACTTACAGTTGCGAAAAGCCCGATTTCCTGAGAAAAAGGGGTAATTGTGAGATATTAATTTGTAATTGGAGAAAAGTCATAATTGCGAGATATAACTCGTAACTGAGAAAAAGTCAAAACTGCGAGATATAAACTCGTAATTGCGAAAAAATCTGAATTGCAACATAAACTCATAATTGCGAAAAAGTCAGAATAGCGACATATAAACTCACTGCATATAAGCttacaactgcaaaaaaaaaaaaaaagtcagaattgcgtaATATAAACTCGTAATTGACAAAGAGTcaggattgcaaaaaaaaaaatagttgcaaTATAAAAACTCATAATTGAAAAAAAACGTCAGAATTGCAAAATATAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008314 lncRNA downstream 71382 44529570 ~ 44530479 (-) True XLOC_004394
TCONS_00008878 lncRNA downstream 76931 44522806 ~ 44524930 (-) True XLOC_004393
TCONS_00008877 lncRNA downstream 150201 44451240 ~ 44451660 (-) True XLOC_004390
TCONS_00008876 lncRNA downstream 151512 44447695 ~ 44450349 (-) True XLOC_004389
TCONS_00008875 lncRNA downstream 216112 44384814 ~ 44385749 (-) True XLOC_004387
TCONS_00008318 lncRNA upstream 9877 44613502 ~ 44617133 (-) False XLOC_004396
TCONS_00008321 lncRNA upstream 13837 44617462 ~ 44619544 (-) False XLOC_004396
TCONS_00008322 lncRNA upstream 14986 44618611 ~ 44622240 (-) True XLOC_004396
TCONS_00008882 lncRNA upstream 113203 44716828 ~ 44722331 (-) True XLOC_004398
TCONS_00008325 lncRNA upstream 147310 44750935 ~ 44756483 (-) True XLOC_004399
TCONS_00008313 mRNA downstream 58779 44526892 ~ 44543082 (-) False XLOC_004394
TCONS_00008312 mRNA downstream 102854 44495858 ~ 44499007 (-) True XLOC_004392
TCONS_00008311 mRNA downstream 102886 44491762 ~ 44498975 (-) False XLOC_004392
TCONS_00008309 mRNA downstream 116099 44474371 ~ 44485762 (-) False XLOC_004391
TCONS_00008315 mRNA upstream 2102 44605727 ~ 44621405 (-) False XLOC_004396
TCONS_00008316 mRNA upstream 2920 44606545 ~ 44622478 (-) False XLOC_004396
TCONS_00008319 mRNA upstream 11442 44615067 ~ 44622250 (-) False XLOC_004396
TCONS_00008320 mRNA upstream 11593 44615218 ~ 44622240 (-) False XLOC_004396
TCONS_00008323 mRNA upstream 33891 44637516 ~ 44647286 (-) False XLOC_004397
TCONS_00008303 other downstream 262641 44337157 ~ 44339220 (-) True XLOC_004385
TCONS_00008295 other downstream 478403 44123327 ~ 44123458 (-) True XLOC_004381
TCONS_00008250 other downstream 3226735 41375011 ~ 41375126 (-) True XLOC_004339
TCONS_00008244 other downstream 3517498 41078191 ~ 41084363 (-) True XLOC_004334
TCONS_00008236 other downstream 3905725 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008317 other upstream 3226 44606851 ~ 44613734 (-) False XLOC_004396
TCONS_00008372 other upstream 827908 45431533 ~ 45435014 (-) False XLOC_004416