RNA id: TCONS_00010712


Basic Information

Item Value
RNA id TCONS_00010712
length 607
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id XLOC_004419
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 65644 ~ 67780 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGATGTTGTAGCCGTACTGAAACGTGCCTCCGATAGCTGCAGAACACACGGTGAACGCCAGAGTGCGCGTCCAGCCCGCCCGCTTCACAGACTCACCCATTATAAACACATCAGTCCTCGAGCATCTACACAGACAAGGAGAACCGAGCAGCTCACGCGGGATAATCCGCACCGTCACCGAACAACTGTGAAAAGCCCAGGAGACGAGCGCGGACGGCGATCTGTCATTGACTAGCGCACGCGGAACTTCCGCAAACATGACGTCAGCGCGTCGCTCGTTCATAATAAAAGTCCGAGCGCGGCGTCGGTATTAAAGGTACTCCAGCCCGACAAATGTAGATCAGCAATTCATACACCGAGAGATAAAGCAGAGGAACAGCTGGCCATCATAGACGAGCAGAAGATTTATAAGATTTGTGTACTGGAGAGAAAGCTGCTGGGTCAGGATAAATGGATGAGTGTAGCCACCTGCCAAAGTCACCTGGAGCCCATAACACAGCATAACAACACAACACCTACACAAGAGCTGTAGTCCTTATGTACAAATAAAAGACACCTCTACAAGGTCAATGTACCAGTGATGGTGACCCGCGGAGCTCAGCACGT

Function

GO:

id name namespace
GO:0009060 aerobic respiration biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0070013 intracellular organelle lumen cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0017154 semaphorin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010713 lncRNA downstream 130836 198616 ~ 202640 (+) True XLOC_004420
TCONS_00010857 lncRNA downstream 212361 280141 ~ 281265 (+) True XLOC_004421
TCONS_00010858 lncRNA downstream 219653 287433 ~ 288561 (+) True XLOC_004422
TCONS_00008890 lncRNA downstream 342258 410038 ~ 456515 (+) False XLOC_004426
TCONS_00010859 lncRNA downstream 342547 410327 ~ 459295 (+) True XLOC_004426
TCONS_00008884 mRNA upstream 15740 47439 ~ 49920 (+) True XLOC_004418
TCONS_00008885 mRNA downstream 129644 197424 ~ 200452 (+) False XLOC_004420
TCONS_00008886 mRNA downstream 224672 292452 ~ 330202 (+) True XLOC_004423
TCONS_00008887 mRNA downstream 248458 316238 ~ 319392 (+) True XLOC_004424
TCONS_00008888 mRNA downstream 320070 387850 ~ 408076 (+) False XLOC_004425
TCONS_00008889 mRNA downstream 322271 390051 ~ 406495 (+) True XLOC_004425
TCONS_00008894 other downstream 442167 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 4429584 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 4983782 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 4984663 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 4989441 5057221 ~ 5057356 (+) True XLOC_004494

Expression Profile

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