RNA id: TCONS_00008890


Basic Information

Item Value
RNA id TCONS_00008890
length 1139
lncRNA type antisense
GC content 0.46
exon number 2
gene id XLOC_004426
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 410038 ~ 459295 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaggttgtTCCGTTTATTACTGTGACCAAACAGTCTATTTACAAATCACGGAGACTATTTGCGCATTTTATTAGCATTAAgcaacattaataattaatttaataatgtaactAGAGtgcttatttattacatttttaattaaaacacgttttatatacatatattaataaatcaaagaGTCGCAATTTTATCGTTAACAATGTATGCCCTTTTTCAGACACTAGCCAATCATGATGTAGCTCCTAAACTTAAATCTCATTGGACAGTGGAAGTGGCGCGGTAAATTGGCGGGCTTGTTTGTTTGTGAGTAGTTTGAGAGCTACGCAAATGCTCTATATATTCTCCAGTGACTTTTTTAAGCGTAAGAGGGAATCGCTAACAGAAACACGACGAATGTCTGTACACACACGCTTCAGTGAAGATCTGATTTTGCTCAATTTACAGTAGAATTTCGTCATTTTACTCTTTTGGATGTGGATGAAAACACTCTGAGACCATGACGCACCGGAAGTGCTATTAAAGcTGTTCGGCCATGGCTCCGTCCCTCACGCCGGCCGACACCACAGAGAAGAAGCATCCGGGCATCAGAGCGCGGATGTAGAGGGCCACGGTGGGCACGGGGTGGGCCAGAAACACCTCTCGGCTCTGTCTGTTCACCGAACGCACGATCTCCTGCGCCAGGATCTGCGGACTCACCCCGTGTGTGTTCAGCTTACTGCAGACGTCTGAAACAACAGCTCAGGTCAGGAGACACACGCAGCACTACCAATGAACACTTCACTAGTCAAGGTGTGTGCGTGGTCCTCAGTGACTCACAGGCCCAAATTGGGTTGGTGGGTGTGGCTTTAGTGGGTGTGGCAGTTATGGGAGTGGCTTCAGTGGGCGTGGCGTTCTCAGCTCCAGCATTGATGAAGGTGTGGCTGATGGTGCTGACGGAGATGCCGAACTCCTCCACCTCCGCCCGCAGACAGTCAAAAAACGCCTGCACTGCATGCTTGGACGCCGCGTCTGAAAACACAACCAGCAGTGCTCAGTCTACTACAACACATGCTCTATTTACTTAACCCCTGTGTGTGGTTAGATTGGCTCTCCTTTGgtgatgttggtgctgtttttaCCACATTGACTTCCATCATA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153242

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010858 lncRNA upstream 121477 287433 ~ 288561 (+) True XLOC_004422
TCONS_00010857 lncRNA upstream 128773 280141 ~ 281265 (+) True XLOC_004421
TCONS_00010713 lncRNA upstream 207398 198616 ~ 202640 (+) True XLOC_004420
TCONS_00010711 lncRNA upstream 342258 65644 ~ 67780 (+) False XLOC_004419
TCONS_00010714 lncRNA downstream 86194 542709 ~ 543010 (+) True XLOC_004429
TCONS_00008899 lncRNA downstream 324484 780999 ~ 782872 (+) True XLOC_004431
TCONS_00010860 lncRNA downstream 435663 892178 ~ 895643 (+) False XLOC_004433
TCONS_00010861 lncRNA downstream 435665 892180 ~ 895643 (+) True XLOC_004433
TCONS_00010862 lncRNA downstream 446073 902588 ~ 903652 (+) True XLOC_004434
TCONS_00008888 mRNA upstream 1962 387850 ~ 408076 (+) False XLOC_004425
TCONS_00008889 mRNA upstream 3543 390051 ~ 406495 (+) True XLOC_004425
TCONS_00008886 mRNA upstream 79836 292452 ~ 330202 (+) True XLOC_004423
TCONS_00008887 mRNA upstream 90646 316238 ~ 319392 (+) True XLOC_004424
TCONS_00008885 mRNA upstream 209586 197424 ~ 200452 (+) False XLOC_004420
TCONS_00008891 mRNA downstream 9186 465701 ~ 528026 (+) False XLOC_004427
TCONS_00008892 mRNA downstream 9809 466324 ~ 497483 (+) False XLOC_004427
TCONS_00008893 mRNA downstream 43366 499881 ~ 528026 (+) False XLOC_004427
TCONS_00008895 mRNA downstream 75504 532019 ~ 540211 (+) True XLOC_004428
TCONS_00008896 mRNA downstream 181920 638435 ~ 639945 (+) True XLOC_004430
TCONS_00008894 other downstream 53432 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 4040849 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 4595047 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 4595928 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 4600706 5057221 ~ 5057356 (+) True XLOC_004494

Expression Profile

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