RNA id: TCONS_00008946


Basic Information

Item Value
RNA id TCONS_00008946
length 1024
RNA type mRNA
GC content 0.41
exon number 7
gene id XLOC_004466
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3848109 ~ 3861759 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTGACGGAGGGACAGGACCATCAGCTCTTCTGCTCCTGGATAAAACACACTGACCGCACAACAGGTTGCAGGGTGTTGAATATCCAGCTTAAAGAAGAGACGTAGACTCCCcaaacacacagacatgactGCATGCATATTTCTACGCGGAGCCAAAATTGACCGAGAGCTGGCGGATGATGAGATTGAAGAGTTGCGTGAGGCCTTTAATGAGTTTGACAAAGATAAGGATGGTCTGATCAGCTGTAAGGATCTGGGGAACCTGATGAGGACGATGGGCTACATGCCCACCGAGATGGAGCTGATCGAGCTGGGCCAGAACATCAACATGAACCTGGGAGGCCGTGTGGACTTCGAGGACTTTGTGGAGCTCATGACCCCGAAGCTTTTGGCAGAAACCGCAGGAATGATCGGCGTGAAGGAGCTCAGAGACGCTTTCAAAGAGTTTGATATGGACGGTGACGGTGCGATCACCACTGAAGAACTGCGCTGTGCGATGACGAAATTACTGGGTGAACACATGAACCGCAGAGAGATCGACGCCGTCGTCCGAGAGGCCGATAATAACGGTGACGGAACTGTAGATTTTGAAGaaTTTGTGAAGATGTTGTCGAGTGTGTGAGAACGTCACCTTGGGTGCTGGAGATTCACAAGATATAAAGCAAAGCGTCTAATGCCAAGCCAGTGCAAAAGATATGcatatatgcacattttttttttaaaatccacaTGGAAAAAAATCCTGACAACTAtgcaaaagataaataaataaataaatctggatTTTATGCAATGCAGATATTGATCTGAGATCTGAATATGcaacatttttttctaattttaagTTTAATAGCATGAAGCTTTTATCTACGTTTTTTGTGAACGTgtttattttgacaaaaattaaaaaaccatttaattaatacatatattaattagaataaatatatgcaattcttttttacttttatcaCAGAACAAATTGCTTTCAGTATCAATTTACTAGTGAAATTATAAACAAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1655 Predicted to enable calcium ion binding activity. Is expressed in eye. Orthologous to human CABP5 (calcium binding protein 5).

Ensembl:

ensembl_id ENSDART00000192042

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010870 lncRNA upstream 828558 2995887 ~ 3019556 (+) False XLOC_004459
TCONS_00008935 lncRNA upstream 839192 3003970 ~ 3008922 (+) True XLOC_004459
TCONS_00010866 lncRNA upstream 1075724 2769589 ~ 2772390 (+) False XLOC_004456
TCONS_00010871 lncRNA downstream 124845 3986079 ~ 3991423 (+) False XLOC_004469
TCONS_00010872 lncRNA downstream 124860 3986094 ~ 3991423 (+) False XLOC_004469
TCONS_00010873 lncRNA downstream 124957 3986191 ~ 3991423 (+) False XLOC_004469
TCONS_00010874 lncRNA downstream 124969 3986203 ~ 3991423 (+) False XLOC_004469
TCONS_00010875 lncRNA downstream 124974 3986208 ~ 3991423 (+) True XLOC_004469
TCONS_00008942 mRNA upstream 116100 3723650 ~ 3732014 (+) False XLOC_004465
TCONS_00008943 mRNA upstream 116136 3723651 ~ 3731978 (+) False XLOC_004465
TCONS_00008944 mRNA upstream 116136 3723677 ~ 3731978 (+) True XLOC_004465
TCONS_00008941 mRNA upstream 273457 3571770 ~ 3574657 (+) True XLOC_004464
TCONS_00008940 mRNA upstream 537437 3301149 ~ 3310677 (+) True XLOC_004463
TCONS_00008947 mRNA downstream 10218 3871452 ~ 3890216 (+) False XLOC_004467
TCONS_00008948 mRNA downstream 14667 3875901 ~ 3909738 (+) True XLOC_004467
TCONS_00008949 mRNA downstream 51310 3912544 ~ 3923070 (+) True XLOC_004468
TCONS_00008950 mRNA downstream 175175 4036409 ~ 4044132 (+) True XLOC_004470
TCONS_00008951 mRNA downstream 253167 4114401 ~ 4145033 (+) False XLOC_004473
TCONS_00008894 other upstream 3326292 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 636130 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 1190328 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 1191209 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 1195987 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 1200333 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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