RNA id: TCONS_00010718


Basic Information

Item Value
RNA id TCONS_00010718
length 223
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_004472
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4103788 ~ 4106410 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACCGTATCCCTGGAGTATGAtgagaaaaaatacatttacttctCTGATTCCATTGATTCTGCACCGGGTTGTGAGGTGAGCACACATGTGGAGGTCTATGAGGAATATTTTTTCCTCAAGGAGGTCATTGGAGGAGTAATTGGAGGACTGTTTATCGTCTCACTCATCACAGCCGCGCTCTATAAGGCTGGCTTTTTTGAAAGAAAGGCCAAGCAGCAGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010717 lncRNA upstream 10215 4092452 ~ 4093573 (+) True XLOC_004471
TCONS_00010871 lncRNA upstream 112365 3986079 ~ 3991423 (+) False XLOC_004469
TCONS_00010876 lncRNA downstream 302249 4408659 ~ 4450452 (+) True XLOC_004478
TCONS_00010877 lncRNA downstream 321713 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010878 lncRNA downstream 622607 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00010879 lncRNA downstream 642161 4748571 ~ 4751852 (+) True XLOC_004484
TCONS_00010880 lncRNA downstream 728439 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00008950 mRNA upstream 59656 4036409 ~ 4044132 (+) True XLOC_004470
TCONS_00008949 mRNA upstream 180718 3912544 ~ 3923070 (+) True XLOC_004468
TCONS_00008948 mRNA upstream 194050 3875901 ~ 3909738 (+) True XLOC_004467
TCONS_00008947 mRNA upstream 213572 3871452 ~ 3890216 (+) False XLOC_004467
TCONS_00008946 mRNA upstream 242554 3848114 ~ 3861234 (+) True XLOC_004466
TCONS_00008951 mRNA downstream 7991 4114401 ~ 4145033 (+) False XLOC_004473
TCONS_00008952 mRNA downstream 10106 4116516 ~ 4143661 (+) True XLOC_004473
TCONS_00008953 mRNA downstream 41304 4147714 ~ 4157240 (+) False XLOC_004474
TCONS_00008954 mRNA downstream 42702 4149112 ~ 4157153 (+) True XLOC_004474
TCONS_00008955 mRNA downstream 54394 4160804 ~ 4167750 (+) True XLOC_004475
TCONS_00008894 other upstream 3581966 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 390954 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 945152 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 946033 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 950811 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 955157 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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