RNA id: TCONS_00008953


Basic Information

Item Value
RNA id TCONS_00008953
length 2343
RNA type mRNA
GC content 0.43
exon number 18
gene id XLOC_004474
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4147714 ~ 4157240 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGGATTGGTACTCCTATATCAGTTTTTGCATCTTCTGTGTGTCTCAGTCGGTCATGGCTTTTAACATCGATCCTGCCAGCTGGAAAACTTTCACTGGACCTTCACAGAGCCAAAATGTTGCCTTTGGCTACAAGGTGATACAGAAAGACACATCAAGTCTGATCGTGAGCGATCCTTTAATTCAAATCAACCAGGATAAAAGAGGACAAATTTATAACTGTGAGGTTGCAAAAGGAACCTGCACACAACTGAACATTACCGTGCCCTCAGAAGCTGTCAACATGTCTCTGGGATTCTCCATGGTTCAACATCCACAATCTTCAAAGCTGGCAATTTGTGGTCCTACCATTCCAAAGAATTGTACAACAGCTACCAACTACAGAGGCATGTGCTTTATTGGGAACAGTGGGGATTTTGGACCACCAATACCCAAATCCAAATACAGAGACTGTCTTGGTCAGATTGACATAGCTTTTCTACTGGATGGCTCTGGGAGTATAGGAATTTATGATTTTACAGTAATGAAGGGTTTTGTGACAAACGTGATCAGACGTTTTATTGAGCGGGATGCACAGTTTGCCATTGCACAGTACTCCAATGACTGTGATATTCACTACAATTTCAATGACCTCAAATTAGATGACGGCACCTGGGAGTCTAAAGTGGCAAATATTCCATATCATGAGGGTGGCACTTTTACTGCATCAGCCATCCAAAAGCTTGTCAATTACCTCTTCACACCAAATGGAGGGACAAGGCCATCAGCAAAAAAAATCTTGGTTGTTATTACTGATGGAGAGTCACATGACAGAAATTTGTTGAAAGATGCAGCATCACAGGCAGAGAAAAACAGCATTGTCCGATTCGCAATTGGAGTTGGCAAAGCTTTTGATTATTACAACGCAAGAGAAGAGTTGAATACAATTGCTTCTGATCCAGACACTGACTATGTGTTTAAAGTGACAGACTTCAATGCACTgaaaaacattcttcaaaagtTGGAAGGGAACATTATTGCGATTGAAGGAACCCAGACTTCAGGAGATTCTTCCAGAATGGAGTTTGCTCAGGATGGATTCAGCACAGCTTTCACATCATCTGGAAGTGTGTTAGTGAGTGCTGTTGGAGCTTTCCAGTGGAAAGGTGGATACCGGGACAATTCCCAAGAAGGCTCCTTTCAAACAGGCAGTGAGCACGAAAGCTATCAAGGTTATTCGATGGCTGTTGCAACAGTGTCATTGACCAGCTTTGCTATTCTAGGAGCTCCAAGATACCAGCATAGAGGACAAGTCACTATTTCCAGAATCGGAACCAATGAAGTTCAACCTCTGGACTCTCCTATGCCTCAGATTGGCTCTTATTTTGGAGCTGAGGTGTGTGTGGTGGATTTGAACAGTGACTCTTATACAGATCTGCTTCTGGTATCAGCACCGACATACACAGAGTCTGAACGAGAGGGGAAAGTGTTTGTTTATAGTTTCACATCTTGGTCAAggttatttttttctgatgtggTGCTGGTGGGCATGGCCGGTCAGAGGGGTCGCTTTGGCTCTTCTCTAGCCAGTCCAGCAGATCTGAATGGTGATGGTTATAGGGATGTGCTGGTTGGTGCTCCATTAGAGGAGGAAGGACAGGGCAGCATCTACATCTTCAATGGACGAGATGGAGGGATCATTTCATCATACTCCCAGAGAATTGCTGGATCATCTGTAAAATCAGGATTGCAGTACTTTGGCGTTTCCTTGAGTCAATCCTCTCCAGACCAGACTGCAGACAGCCTTCCTGACATTGCTGCTGGGTCCAAAGGAGCAGTTCTGCTTCTCAGGTCCAGACCCATCATGCTCTTGGAAACAATGGTTTCTTACACCCCATCCAAAATATCAACCATTCAACAAGACTGCTTAATACCATTGCAGACCACTCTGACCGTGTGCTTCACCATGAAAGGATACAGGCATCACAGAAGAGGTTTGAATGCAAAAATTGCTTACAACATAACCCTGGATGCTAAAAGACAGGCCTATCGAGCATTCTTCTCAGCCAAAGAGCGTCTCCTCAGTGATGTGATTGACATTGGAAGTACAGAAGCTTGCAATAATCATAATTTCTCAATAGAGGCTTGTCCAGAAGATGCTCTGAATCCATTGTCCAATCAGTTAAAATTCACCTTTGAGGGTCTGCCATCTAGTCAAATGCAAAACCTGAGGCCAATACTGCTGCCAGAGATAAAGACCACCTCAGATCACGATGTAAGAGTTCATCTGTGTAAAGTTACGAGTGGAAATGATGCACTTTTAACAGTGGGCTATATAACAGTGGGTTTCACATATTACTAA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04514 Cell adhesion molecules
ko04145 Phagosome
ko04810 Regulation of actin cytoskeleton
ko04640 Hematopoietic cell lineage
ko04610 Complement and coagulation cascades
ko04613 Neutrophil extracellular trap formation
ko04670 Leukocyte transendothelial migration
ko05202 Transcriptional misregulation in cancer
ko05221 Acute myeloid leukemia
ko05133 Pertussis
ko05134 Legionellosis
ko05150 Staphylococcus aureus infection
ko05152 Tuberculosis
ko05146 Amoebiasis
ko05140 Leishmaniasis
ko04131 Membrane trafficking
ko04147 Exosome
ko04515 Cell adhesion molecules
ko04090 CD molecules
ko00536 Glycosaminoglycan binding proteins

ZFIN:

id description
ZDB-GENE-110510-4 Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Human ortholog(s) of this gene implicated in lupus nephritis. Orthologous to human ITGAM (integrin subunit alpha M).

Ensembl:

ensembl_id ENSDART00000171640

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010718 lncRNA upstream 41304 4103788 ~ 4106410 (+) True XLOC_004472
TCONS_00010717 lncRNA upstream 54141 4092452 ~ 4093573 (+) True XLOC_004471
TCONS_00010873 lncRNA upstream 156291 3986191 ~ 3991423 (+) False XLOC_004469
TCONS_00010876 lncRNA downstream 251419 4408659 ~ 4450452 (+) True XLOC_004478
TCONS_00010877 lncRNA downstream 270883 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010878 lncRNA downstream 571777 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00010879 lncRNA downstream 591331 4748571 ~ 4751852 (+) True XLOC_004484
TCONS_00010880 lncRNA downstream 677609 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00008951 mRNA upstream 2681 4114401 ~ 4145033 (+) False XLOC_004473
TCONS_00008952 mRNA upstream 4053 4116516 ~ 4143661 (+) True XLOC_004473
TCONS_00008950 mRNA upstream 103582 4036409 ~ 4044132 (+) True XLOC_004470
TCONS_00008949 mRNA upstream 224644 3912544 ~ 3923070 (+) True XLOC_004468
TCONS_00008948 mRNA upstream 237976 3875901 ~ 3909738 (+) True XLOC_004467
TCONS_00008955 mRNA downstream 3564 4160804 ~ 4167750 (+) True XLOC_004475
TCONS_00008956 mRNA downstream 63113 4220353 ~ 4238699 (+) False XLOC_004476
TCONS_00008957 mRNA downstream 65614 4222854 ~ 4238827 (+) False XLOC_004476
TCONS_00008958 mRNA downstream 67959 4225199 ~ 4238827 (+) True XLOC_004476
TCONS_00008959 mRNA downstream 103539 4260779 ~ 4278329 (+) True XLOC_004477
TCONS_00008894 other upstream 3625892 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 340124 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 894322 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 895203 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 899981 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 904327 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

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