Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008955 |
| length | 694 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 8 |
| gene id | XLOC_004475 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 4160804 ~ 4167750 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007229 | integrin-mediated signaling pathway | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0008305 | integrin complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ko04015 | Rap1 signaling pathway |
| ko04514 | Cell adhesion molecules |
| ko04145 | Phagosome |
| ko04810 | Regulation of actin cytoskeleton |
| ko04640 | Hematopoietic cell lineage |
| ko04610 | Complement and coagulation cascades |
| ko04613 | Neutrophil extracellular trap formation |
| ko04670 | Leukocyte transendothelial migration |
| ko05202 | Transcriptional misregulation in cancer |
| ko05221 | Acute myeloid leukemia |
| ko05133 | Pertussis |
| ko05134 | Legionellosis |
| ko05150 | Staphylococcus aureus infection |
| ko05152 | Tuberculosis |
| ko05146 | Amoebiasis |
| ko05140 | Leishmaniasis |
| ko04131 | Membrane trafficking |
| ko04147 | Exosome |
| ko04515 | Cell adhesion molecules |
| ko04090 | CD molecules |
| ko00536 | Glycosaminoglycan binding proteins |
| id | description |
|---|---|
| ZDB-GENE-110510-4 | Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Human ortholog(s) of this gene implicated in lupus nephritis. Orthologous to human ITGAM (integrin subunit alpha M). |
| ensembl_id | ENSDART00000152515 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010718 | lncRNA | upstream | 54394 | 4103788 ~ 4106410 (+) | True | XLOC_004472 |
| TCONS_00010717 | lncRNA | upstream | 67231 | 4092452 ~ 4093573 (+) | True | XLOC_004471 |
| TCONS_00010873 | lncRNA | upstream | 169381 | 3986191 ~ 3991423 (+) | False | XLOC_004469 |
| TCONS_00010876 | lncRNA | downstream | 240909 | 4408659 ~ 4450452 (+) | True | XLOC_004478 |
| TCONS_00010877 | lncRNA | downstream | 260373 | 4428123 ~ 4473148 (+) | True | XLOC_004479 |
| TCONS_00010878 | lncRNA | downstream | 561267 | 4729017 ~ 4734988 (+) | True | XLOC_004483 |
| TCONS_00010879 | lncRNA | downstream | 580821 | 4748571 ~ 4751852 (+) | True | XLOC_004484 |
| TCONS_00010880 | lncRNA | downstream | 667099 | 4834849 ~ 4835314 (+) | True | XLOC_004485 |
| TCONS_00008953 | mRNA | upstream | 3564 | 4147714 ~ 4157240 (+) | False | XLOC_004474 |
| TCONS_00008954 | mRNA | upstream | 3651 | 4149112 ~ 4157153 (+) | True | XLOC_004474 |
| TCONS_00008951 | mRNA | upstream | 15771 | 4114401 ~ 4145033 (+) | False | XLOC_004473 |
| TCONS_00008952 | mRNA | upstream | 17143 | 4116516 ~ 4143661 (+) | True | XLOC_004473 |
| TCONS_00008950 | mRNA | upstream | 116672 | 4036409 ~ 4044132 (+) | True | XLOC_004470 |
| TCONS_00008956 | mRNA | downstream | 52603 | 4220353 ~ 4238699 (+) | False | XLOC_004476 |
| TCONS_00008957 | mRNA | downstream | 55104 | 4222854 ~ 4238827 (+) | False | XLOC_004476 |
| TCONS_00008958 | mRNA | downstream | 57449 | 4225199 ~ 4238827 (+) | True | XLOC_004476 |
| TCONS_00008959 | mRNA | downstream | 93029 | 4260779 ~ 4278329 (+) | True | XLOC_004477 |
| TCONS_00008961 | mRNA | downstream | 405946 | 4573696 ~ 4576816 (+) | True | XLOC_004481 |
| TCONS_00008894 | other | upstream | 3638982 | 509947 ~ 521822 (+) | True | XLOC_004427 |
| TCONS_00008960 | other | downstream | 329614 | 4497364 ~ 4497479 (+) | True | XLOC_004480 |
| TCONS_00008972 | other | downstream | 883812 | 5051562 ~ 5051697 (+) | True | XLOC_004492 |
| TCONS_00008973 | other | downstream | 884693 | 5052443 ~ 5052578 (+) | True | XLOC_004493 |
| TCONS_00008974 | other | downstream | 889471 | 5057221 ~ 5057356 (+) | True | XLOC_004494 |
| TCONS_00008975 | other | downstream | 893817 | 5061567 ~ 5061697 (+) | True | XLOC_004495 |
