RNA id: TCONS_00010880


Basic Information

Item Value
RNA id TCONS_00010880
length 347
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id XLOC_004485
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4834849 ~ 4835314 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCAAATACCTCCAGGTCACAGGCTCATTGAGAAGATCCTCAGATTCGTCGTTTTGCGGGGGATTCAATCCACTTTGGCTTGAGTCTTCGTTCCTTAATTTTTCATCCAAACTGTGTTCCGGCCAACATGCATGGCAGTGGAACGTGGATTTTGGCATTGAGTCTTTGTTCGGGTCACCTGAAGACGCTGAAGCGTTGCGATATCGTTTACATTCCTCATATGCATCGTCGACTCTCAATCGCAATCTTTCCACATCTACCGGAGGCTGCTTGGCTTTGAGAGACTCACTGGCTCGTGCCCTGCACGGTAAAAACTTGTCATAGCACAATCAACCGGCGTCGGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010879 lncRNA upstream 82997 4748571 ~ 4751852 (+) True XLOC_004484
TCONS_00010878 lncRNA upstream 99861 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00010877 lncRNA upstream 361701 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010876 lncRNA upstream 384397 4408659 ~ 4450452 (+) True XLOC_004478
TCONS_00010718 lncRNA upstream 728439 4103788 ~ 4106410 (+) True XLOC_004472
TCONS_00010719 lncRNA downstream 1145950 5981264 ~ 5981577 (+) True XLOC_004507
TCONS_00008994 lncRNA downstream 1206264 6041578 ~ 6048286 (+) False XLOC_004509
TCONS_00008995 lncRNA downstream 1206279 6041593 ~ 6044881 (+) False XLOC_004509
TCONS_00008996 lncRNA downstream 1208685 6043999 ~ 6048286 (+) True XLOC_004509
TCONS_00010881 lncRNA downstream 1309391 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00008962 mRNA upstream 109189 4686145 ~ 4725660 (+) False XLOC_004482
TCONS_00008963 mRNA upstream 113125 4712215 ~ 4721724 (+) True XLOC_004482
TCONS_00008961 mRNA upstream 258033 4573696 ~ 4576816 (+) True XLOC_004481
TCONS_00008959 mRNA upstream 556520 4260779 ~ 4278329 (+) True XLOC_004477
TCONS_00008957 mRNA upstream 596022 4222854 ~ 4238827 (+) False XLOC_004476
TCONS_00008964 mRNA downstream 10134 4845448 ~ 4854555 (+) True XLOC_004486
TCONS_00008965 mRNA downstream 33934 4869248 ~ 4893492 (+) True XLOC_004487
TCONS_00008966 mRNA downstream 65667 4900981 ~ 4906924 (+) True XLOC_004488
TCONS_00008967 mRNA downstream 85137 4920451 ~ 4962882 (+) False XLOC_004489
TCONS_00008968 mRNA downstream 85137 4920451 ~ 4963153 (+) True XLOC_004489
TCONS_00008960 other upstream 337370 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008894 other upstream 4313027 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008972 other downstream 216248 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 217129 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 221907 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 226253 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008977 other downstream 254501 5089815 ~ 5089930 (+) True XLOC_004497