RNA id: TCONS_00008966



Basic Information


Item Value
RNA id TCONS_00008966
length 843
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_004488
representative True

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4900981 ~ 4906924 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGAGTGTATTGATTTGCATGTTTCTCAGAAGTATCTTCACAGCTTTAGACCTGCACCTTCTGGCAGAGGCAGGACTGTGCTCTGGTGAGCTGTACTCCTTCTGTTCACTCTCTGTGACAGACGTCTACATTACTTTCAGAGGTGGATTTGAAGACTTCAACATCATGCATCACTTCTTGCTGGGATTCTCAGTCATGGCATTGATTTACCTGTCAGCTGAAGGAAGCATCATTGTATTCCAGAAGCCCAGATTTATTGGCGTTAAGACAGGTCGGACTGTGATCATATACTGTGTGCCGTCGAATCCCACTCGCGGGCCAGCTCGTGTACAGTGGTTCAAAAACAAGAATTACCAAAGCTCACTTACGAATGACCAGAGAATAACAATTAACGACAGGAACAATGATAAAAATGCTTCCATTACTTTAAAGAAAGTGGAGACTGAGGACAGTGGCACTTACGTTTGTAAATTAAATGATACGTTCGGACCAGGAACTGCACTTCAAGTATCCAGATATAGCGAGCCTCATGCTGTCTTGATGAGATCTAGAGTTAAGGATGTCATCATTTTCCTTCAGGCTTTCCTCTTGGTTTTGTGCATTGTCGTTCCTCTGGTTCGACTTTACAAACTGGAGAAGAAAGAAGAGGCTGAATATGAGGAGCCAGAGGATGACCACATATATGAGGGTTTGGAAATCGAGCAGGTTGGTGGAGATGTGTATGAGGACATCTCAACGTTTGCCCAGAGCAGTGATGCAGCTTGGCAAGTTGAGTCTCCATGCCAAGAGTGAGAAAAACCAACGATATCTCACACCATTTCatacttttttgatttagtggct

Function


GO:

id name namespace
GO:0030183 B cell differentiation biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0019815 B cell receptor complex cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04662 B cell receptor signaling pathway
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-121219-1 Predicted to be involved in B cell differentiation and B cell receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of B cell receptor complex. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in agammaglobulinemia. Orthologous to human CD79B (CD79b molecule).

Ensembl:

ensembl_id ENSDART00000171507

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00010880 lncRNA upstream 65667 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00010879 lncRNA upstream 149129 4748571 ~ 4751852 (+) True XLOC_004484
TCONS_00010878 lncRNA upstream 165993 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00010877 lncRNA upstream 427833 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010876 lncRNA upstream 450529 4408659 ~ 4450452 (+) True XLOC_004478
TCONS_00010719 lncRNA downstream 1074340 5981264 ~ 5981577 (+) True XLOC_004507
TCONS_00008994 lncRNA downstream 1134654 6041578 ~ 6048286 (+) False XLOC_004509
TCONS_00008995 lncRNA downstream 1134669 6041593 ~ 6044881 (+) False XLOC_004509
TCONS_00008996 lncRNA downstream 1137075 6043999 ~ 6048286 (+) True XLOC_004509
TCONS_00010881 lncRNA downstream 1237781 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00008965 mRNA upstream 7489 4869248 ~ 4893492 (+) True XLOC_004487
TCONS_00008964 mRNA upstream 46426 4845448 ~ 4854555 (+) True XLOC_004486
TCONS_00008962 mRNA upstream 175321 4686145 ~ 4725660 (+) False XLOC_004482
TCONS_00008963 mRNA upstream 179257 4712215 ~ 4721724 (+) True XLOC_004482
TCONS_00008961 mRNA upstream 324165 4573696 ~ 4576816 (+) True XLOC_004481
TCONS_00008967 mRNA downstream 13527 4920451 ~ 4962882 (+) False XLOC_004489
TCONS_00008968 mRNA downstream 13527 4920451 ~ 4963153 (+) True XLOC_004489
TCONS_00008969 mRNA downstream 64591 4971515 ~ 5044931 (+) True XLOC_004490
TCONS_00008970 mRNA downstream 141120 5048044 ~ 5059743 (+) False XLOC_004491
TCONS_00008971 mRNA downstream 141150 5048074 ~ 5071836 (+) True XLOC_004491
TCONS_00008960 other upstream 403502 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008894 other upstream 4379159 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008972 other downstream 144638 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 145519 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 150297 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 154643 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008977 other downstream 182891 5089815 ~ 5089930 (+) True XLOC_004497

Expression Profile


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