Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008970 |
| length | 745 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 5 |
| gene id | XLOC_004491 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 5048044 ~ 5071836 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001756 | somitogenesis | biological_process |
| GO:0007018 | microtubule-based movement | biological_process |
| GO:0048592 | eye morphogenesis | biological_process |
| GO:0021952 | central nervous system projection neuron axonogenesis | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0001966 | thigmotaxis | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005871 | kinesin complex | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003777 | microtubule motor activity | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| GO:0016887 | ATPase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080204-34 | Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within several processes, including central nervous system development; somitogenesis; and thigmotaxis. Predicted to be located in cytoplasm; cytoskeleton; and nucleus. Predicted to be part of kinesin complex. Predicted to be active in microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia with joint laxity type 2. Orthologous to human KIF22 (kinesin family member 22). |
| ensembl_id | ENSDART00000161548 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010880 | lncRNA | upstream | 212730 | 4834849 ~ 4835314 (+) | True | XLOC_004485 |
| TCONS_00010879 | lncRNA | upstream | 296192 | 4748571 ~ 4751852 (+) | True | XLOC_004484 |
| TCONS_00010878 | lncRNA | upstream | 313056 | 4729017 ~ 4734988 (+) | True | XLOC_004483 |
| TCONS_00010877 | lncRNA | upstream | 574896 | 4428123 ~ 4473148 (+) | True | XLOC_004479 |
| TCONS_00010876 | lncRNA | upstream | 597592 | 4408659 ~ 4450452 (+) | True | XLOC_004478 |
| TCONS_00010719 | lncRNA | downstream | 921521 | 5981264 ~ 5981577 (+) | True | XLOC_004507 |
| TCONS_00008994 | lncRNA | downstream | 981835 | 6041578 ~ 6048286 (+) | False | XLOC_004509 |
| TCONS_00008995 | lncRNA | downstream | 981850 | 6041593 ~ 6044881 (+) | False | XLOC_004509 |
| TCONS_00008996 | lncRNA | downstream | 984256 | 6043999 ~ 6048286 (+) | True | XLOC_004509 |
| TCONS_00010881 | lncRNA | downstream | 1084962 | 6144705 ~ 6145821 (+) | False | XLOC_004512 |
| TCONS_00008969 | mRNA | upstream | 3113 | 4971515 ~ 5044931 (+) | True | XLOC_004490 |
| TCONS_00008968 | mRNA | upstream | 84891 | 4920451 ~ 4963153 (+) | True | XLOC_004489 |
| TCONS_00008967 | mRNA | upstream | 85162 | 4920451 ~ 4962882 (+) | False | XLOC_004489 |
| TCONS_00008966 | mRNA | upstream | 141120 | 4900981 ~ 4906924 (+) | True | XLOC_004488 |
| TCONS_00008965 | mRNA | upstream | 154552 | 4869248 ~ 4893492 (+) | True | XLOC_004487 |
| TCONS_00008976 | mRNA | downstream | 22016 | 5081759 ~ 5095774 (+) | True | XLOC_004496 |
| TCONS_00008978 | mRNA | downstream | 42927 | 5102670 ~ 5113389 (+) | True | XLOC_004498 |
| TCONS_00008979 | mRNA | downstream | 69502 | 5129245 ~ 5154099 (+) | True | XLOC_004499 |
| TCONS_00008980 | mRNA | downstream | 130033 | 5189776 ~ 5204629 (+) | False | XLOC_004500 |
| TCONS_00008981 | mRNA | downstream | 130306 | 5190049 ~ 5194256 (+) | True | XLOC_004500 |
| TCONS_00008960 | other | upstream | 550565 | 4497364 ~ 4497479 (+) | True | XLOC_004480 |
| TCONS_00008894 | other | upstream | 4526222 | 509947 ~ 521822 (+) | True | XLOC_004427 |
| TCONS_00008975 | other | downstream | 1824 | 5061567 ~ 5061697 (+) | True | XLOC_004495 |
| TCONS_00008977 | other | downstream | 30072 | 5089815 ~ 5089930 (+) | True | XLOC_004497 |
| TCONS_00009009 | other | downstream | 1648386 | 6708129 ~ 6708243 (+) | True | XLOC_004517 |
| TCONS_00009013 | other | downstream | 2360289 | 7420032 ~ 7420148 (+) | True | XLOC_004520 |
| TCONS_00009018 | other | downstream | 2501322 | 7561065 ~ 7561202 (+) | True | XLOC_004522 |
