Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008981 |
| length | 541 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 3 |
| gene id | XLOC_004500 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 5189776 ~ 5204629 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048854 | brain morphogenesis | biological_process |
| GO:0042552 | myelination | biological_process |
| id | description |
|---|---|
| ZDB-GENE-060217-1 | Acts upstream of or within brain morphogenesis and myelination. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; eye; head mesenchyme; heart; and skeletal muscle. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-1; childhood absence epilepsy; and familial temporal lobe epilepsy 1. Orthologous to several human genes including LGI1 (leucine rich glioma inactivated 1). |
| ensembl_id | ENSDART00000126667 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010880 | lncRNA | upstream | 354735 | 4834849 ~ 4835314 (+) | True | XLOC_004485 |
| TCONS_00010879 | lncRNA | upstream | 438197 | 4748571 ~ 4751852 (+) | True | XLOC_004484 |
| TCONS_00010878 | lncRNA | upstream | 455061 | 4729017 ~ 4734988 (+) | True | XLOC_004483 |
| TCONS_00010877 | lncRNA | upstream | 716901 | 4428123 ~ 4473148 (+) | True | XLOC_004479 |
| TCONS_00010876 | lncRNA | upstream | 739597 | 4408659 ~ 4450452 (+) | True | XLOC_004478 |
| TCONS_00010719 | lncRNA | downstream | 787008 | 5981264 ~ 5981577 (+) | True | XLOC_004507 |
| TCONS_00008994 | lncRNA | downstream | 847322 | 6041578 ~ 6048286 (+) | False | XLOC_004509 |
| TCONS_00008995 | lncRNA | downstream | 847337 | 6041593 ~ 6044881 (+) | False | XLOC_004509 |
| TCONS_00008996 | lncRNA | downstream | 849743 | 6043999 ~ 6048286 (+) | True | XLOC_004509 |
| TCONS_00010881 | lncRNA | downstream | 950449 | 6144705 ~ 6145821 (+) | False | XLOC_004512 |
| TCONS_00008979 | mRNA | upstream | 35950 | 5129245 ~ 5154099 (+) | True | XLOC_004499 |
| TCONS_00008978 | mRNA | upstream | 76660 | 5102670 ~ 5113389 (+) | True | XLOC_004498 |
| TCONS_00008976 | mRNA | upstream | 94275 | 5081759 ~ 5095774 (+) | True | XLOC_004496 |
| TCONS_00008971 | mRNA | upstream | 118213 | 5048074 ~ 5071836 (+) | True | XLOC_004491 |
| TCONS_00008970 | mRNA | upstream | 130306 | 5048044 ~ 5059743 (+) | False | XLOC_004491 |
| TCONS_00008982 | mRNA | downstream | 15566 | 5209822 ~ 5224777 (+) | False | XLOC_004501 |
| TCONS_00008983 | mRNA | downstream | 21539 | 5215795 ~ 5222247 (+) | True | XLOC_004501 |
| TCONS_00008984 | mRNA | downstream | 57391 | 5251647 ~ 5394505 (+) | False | XLOC_004502 |
| TCONS_00008985 | mRNA | downstream | 164153 | 5358409 ~ 5398578 (+) | True | XLOC_004502 |
| TCONS_00008986 | mRNA | downstream | 264206 | 5458462 ~ 5459742 (+) | False | XLOC_004503 |
| TCONS_00008977 | other | upstream | 100119 | 5089815 ~ 5089930 (+) | True | XLOC_004497 |
| TCONS_00008975 | other | upstream | 128352 | 5061567 ~ 5061697 (+) | True | XLOC_004495 |
| TCONS_00008974 | other | upstream | 132693 | 5057221 ~ 5057356 (+) | True | XLOC_004494 |
| TCONS_00008973 | other | upstream | 137471 | 5052443 ~ 5052578 (+) | True | XLOC_004493 |
| TCONS_00008972 | other | upstream | 138352 | 5051562 ~ 5051697 (+) | True | XLOC_004492 |
| TCONS_00009009 | other | downstream | 1513873 | 6708129 ~ 6708243 (+) | True | XLOC_004517 |
| TCONS_00009013 | other | downstream | 2225776 | 7420032 ~ 7420148 (+) | True | XLOC_004520 |
| TCONS_00009018 | other | downstream | 2366809 | 7561065 ~ 7561202 (+) | True | XLOC_004522 |
| TCONS_00009019 | other | downstream | 2538278 | 7732534 ~ 7732650 (+) | True | XLOC_004523 |
| TCONS_00009055 | other | downstream | 4940110 | 10134366 ~ 10145811 (+) | False | XLOC_004553 |
