RNA id: TCONS_00008983



Basic Information


Item Value
RNA id TCONS_00008983
length 987
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_004501
representative True

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 5209822 ~ 5224777 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


cgcccacccacttacttccctaaaccctcAACCGatgcagtattattattatattcgtCCACAGAAAAGCAGCCGTCATGTCCGGGGCTGGGCCTCATGTACAGCTTGTTAGCGTCTGTCTTCTTCTCCATTGCGGCTCTTCTTGTGAAGAAAATGGAGGGGATGCACGCCATCCAAATCAGTGCCATTCGCTGCTTCTTCCAGATGCTGTTTGTCTTGCCAGCCATGATATATTACAAAACTGGCTTTTTGGGACCAAGAGGTATGCGAATCTACCTGTTCCTCCGTGGCTTTCTAGGCTCCAATGCCATGATCTTGTTGTATTACGCAGTTCTTCAAATGCCTCTGGCTGATGCCACAGTTATAATGTTCAGCAATCCAGTCTTTACAGCCTTGCTGGCGTGGATTTTCCTCAAAGAGCGATGCACGATATGGGACGTGGTCTTCACTGTGTTTACACTCACCGGCGTCATTCTGATAGCCAGACCACCATTCCTGTTCGGCGGCGAGTTGTCAGGGATTGAAGGGGATTATAGCAGTCACATCAAGGGCACAGTGGCCGCCTTTTCTGGAGCGGTCGGAGCAGCTTGCACTATGGTCATTCTGAGAAAAATCGGGAAAAGGGTTCACTACTTCCTCTCCGTATGGTACTATGCAGTTCTGGGACTCATCGAATGTGTCGTTGTCCTGTTCATCTTGGACGAGTGGACTATTCCGTCCTGCGGCTGGGATAGATGGACGCTCATGGCCATCGGGGTGCTCGGCATAGCCGGACAGGCCTTTCTTACCAAAGCACTGCAGATCGAGAAGGCAGGACCAGTTGCACTTATGAGGACGATGGATGTGGTGCTGGCCTTCGTCCTGCAGTTCCTCTTCCTCAACCGCAAGCCAACATGGTGGAGTTTAGGAGGAGCGCTGTGTGTGATCAGCAGCACCAGTGGAGTGGCCTTAAGGAAGTGGTATAACAGCACAAGACAGAAGAGCTGA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170270

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00010880 lncRNA upstream 380481 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00010879 lncRNA upstream 463943 4748571 ~ 4751852 (+) True XLOC_004484
TCONS_00010878 lncRNA upstream 480807 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00010877 lncRNA upstream 742647 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010876 lncRNA upstream 765343 4408659 ~ 4450452 (+) True XLOC_004478
TCONS_00010719 lncRNA downstream 759017 5981264 ~ 5981577 (+) True XLOC_004507
TCONS_00008994 lncRNA downstream 819331 6041578 ~ 6048286 (+) False XLOC_004509
TCONS_00008995 lncRNA downstream 819346 6041593 ~ 6044881 (+) False XLOC_004509
TCONS_00008996 lncRNA downstream 821752 6043999 ~ 6048286 (+) True XLOC_004509
TCONS_00010881 lncRNA downstream 922458 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00008980 mRNA upstream 11166 5189776 ~ 5204629 (+) False XLOC_004500
TCONS_00008981 mRNA upstream 21539 5190049 ~ 5194256 (+) True XLOC_004500
TCONS_00008979 mRNA upstream 61696 5129245 ~ 5154099 (+) True XLOC_004499
TCONS_00008978 mRNA upstream 102406 5102670 ~ 5113389 (+) True XLOC_004498
TCONS_00008976 mRNA upstream 120021 5081759 ~ 5095774 (+) True XLOC_004496
TCONS_00008984 mRNA downstream 29400 5251647 ~ 5394505 (+) False XLOC_004502
TCONS_00008985 mRNA downstream 136162 5358409 ~ 5398578 (+) True XLOC_004502
TCONS_00008986 mRNA downstream 236215 5458462 ~ 5459742 (+) False XLOC_004503
TCONS_00008987 mRNA downstream 236215 5458462 ~ 5460203 (+) True XLOC_004503
TCONS_00008988 mRNA downstream 308000 5530247 ~ 5582060 (+) True XLOC_004504
TCONS_00008977 other upstream 125865 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 154098 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 158439 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 163217 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008972 other upstream 164098 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00009009 other downstream 1485882 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00009013 other downstream 2197785 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 2338818 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 2510287 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 4912119 10134366 ~ 10145811 (+) False XLOC_004553

Expression Profile


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