RNA id: TCONS_00010719


Basic Information

Item Value
RNA id TCONS_00010719
length 235
lncRNA type read_through
GC content 0.42
exon number 2
gene id XLOC_004507
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 5977777 ~ 5981577 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAGAGCAATCCCAGAGACGAGTACAGCAAAATCTGCAGCTCTGAACAAACGGACAGCAGATCTGCAGGAGGAATGGGACAGACTTCAGTACTGACGACCTCACAGACGTCTAAAAACACAGTTATTCTTCACTCTTAACATTGTACTCCAGGGAAACTGGGAgtatacacacacaagcaaatgTCTTGCTGGGATATCAAATAAATGGCGTAATAAAAGTATTTATCAAAATG

Function

GO:

id name namespace
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0006954 inflammatory response biological_process
GO:0005615 extracellular space cellular_component
GO:0031835 substance P receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010880 lncRNA upstream 1145950 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00010879 lncRNA upstream 1229412 4748571 ~ 4751852 (+) True XLOC_004484
TCONS_00010878 lncRNA upstream 1246276 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00010877 lncRNA upstream 1508116 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010876 lncRNA upstream 1530812 4408659 ~ 4450452 (+) True XLOC_004478
TCONS_00008994 lncRNA downstream 60001 6041578 ~ 6048286 (+) False XLOC_004509
TCONS_00008995 lncRNA downstream 60016 6041593 ~ 6044881 (+) False XLOC_004509
TCONS_00008996 lncRNA downstream 62422 6043999 ~ 6048286 (+) True XLOC_004509
TCONS_00010881 lncRNA downstream 163128 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00010882 lncRNA downstream 163128 6144705 ~ 6152579 (+) True XLOC_004512
TCONS_00008990 mRNA upstream 170985 5775853 ~ 5810279 (+) True XLOC_004506
TCONS_00008989 mRNA upstream 269344 5708400 ~ 5711920 (+) True XLOC_004505
TCONS_00008988 mRNA upstream 399204 5530247 ~ 5582060 (+) True XLOC_004504
TCONS_00008987 mRNA upstream 521061 5458462 ~ 5460203 (+) True XLOC_004503
TCONS_00008986 mRNA upstream 521522 5458462 ~ 5459742 (+) False XLOC_004503
TCONS_00008992 mRNA downstream 21138 6002715 ~ 6006865 (+) True XLOC_004508
TCONS_00008993 mRNA downstream 59998 6041575 ~ 6048286 (+) False XLOC_004509
TCONS_00008997 mRNA downstream 84084 6065661 ~ 6114296 (+) False XLOC_004510
TCONS_00008998 mRNA downstream 117136 6098713 ~ 6102809 (+) False XLOC_004510
TCONS_00008999 mRNA downstream 120894 6102471 ~ 6113343 (+) True XLOC_004510
TCONS_00008977 other upstream 891334 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 919567 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 923908 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 928686 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008972 other upstream 929567 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00009009 other downstream 726552 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00009013 other downstream 1438455 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 1579488 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 1750957 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 4152789 10134366 ~ 10145811 (+) False XLOC_004553

Expression Profile

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