RNA id: TCONS_00008996


Basic Information

Item Value
RNA id TCONS_00008996
length 2318
lncRNA type sense_over
GC content 0.37
exon number 3
gene id XLOC_004509
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6041575 ~ 6048286 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCTCAAACAAAACAAGTCAGCTTATAGGCCTATAAGTCGACAAAAATGTAAACTAATATTCACAGAAATCTTCGTGATGGATTTAACTTACACAAggttaaaatgtttcaaattgtTTCCTTCATTAGTTTCGGTTTTATATCGATTCTTATGTTGTTAAATGAACGTATATTGTATTATCTTTGTATAactatgatgtacttttaaatttgtgtttatgACACCAATAATTTGACTATTTTGCTTAACTTTAACGTGGTTTTCCCTTTGCTTACTGTGTGGCAATTAGCATATAAGAAATTAGCATCTTCAAAGCTATTTCATCTTATAGCAAAAATCCCTCACTCAACTTGATCTTCTTCTTGATACAGGTAGCCCATCAGGTCATGCTATGGGTGCTGCTGGTGTTTACTACACACTGGTCACCTCCATCCTCGCCATAATGCTTAGCAAAGGGAAGAAATCAACATCCAATAGCCTATACTTGCGTGGCTCACTTTGGACACTCTTCTGGACGGTCCAGATCTGTGTTTGTCTCTCTCGGGTCTTCATCGCCGCTCATTTCCCACATCAAGTTTTCGCTGGTGTCATTTCAGGCATGATTGTTGCCGAGGCTTTCAACAGGCAGAAATGGATCTACAGTGCGAGTCTAAAGAATTACTTCAACGTCACGCTCTTCCTGCTCTCGTTCGCTGTGGGTTTGTACGTCCTCCTGAAGGCTCTCGGTGTGGATCTGCTCTGGACTCTTGAGAAAGCCCAGAAATGGTGCGCCAACCCAGCCTGGGTTCATTTGGACACCACACCGTTCGCAAGTCTGCTGAGGAACATGGGCACCCTGTTCGGTCTGGGGCTCGGTCTTCATTCACCGCTGTACACAGAGAGCAAGAAAAGCAGCAACGCTTTTGTCAGGATCACCTGTATTATCGCATCTCTGCTCCTGCTGCATCTCTTTGACTCCATCAAACCACCAACGCACACGGCTGCTCTCTTCTACCTCCTGTCCTTCTGCAAAAGTGCCACCGTTCCCCTCGTCACGGTCAGCATCATCCCGTACTGCTTATCCGGAGCCCTCGGGTTACAGAGCAAAAAACAGCTTTAGGCTTGAAATGAACTGTATTAAGACTGTAAGGAAAGTTCACTAGTTCAATAGTGCATCCCGCACTGCAAATAATGCTGcaaaaatgtcttgtttctagaccaaatatctaaaaattattaaatcaaggaAGATTTTCCAGACAAGCAGATAAaagtgtcttgtttttagaaataatatggcaaaattaagcaagtttttcccttaaaacaacactgtaaaacccaaaaagttaaggtaactcaaactatttgaggaaaccaattgtaacaaaccatttaagttcaaaaactactcctaatgagtactttgaacttaatccatttgagtaaacgaagcaatttgagcacagtaaaacccaatagataaagagaactcaaaccaactgattactgtaaagcccaataatttaagaaaaactcaaaccgtttgaggaaactgattgctacaaaccatttgagttaaaaaaaataatctatatgagtactgtgaacttactccatttaagttgaggtACTGAGGTATTAaactaactcattaccttcaacactgagttcaaaagtCTCTTTaaattagtagaattaactttcagtacattttgagttaactacactcatttcatttgataaagactgttgggttttacagtgaagcAAAAATAATCAACCAATGggataagctaaataatcttgtttttccttttgacataagatcaTGTTGCTTAcacaattggcagattattttgcttgtttaaaggaaaaactcaaataattttgacatatttttactgaaaacaagacaatatgtttagcttgtctagaaaatgctttttgatttaagaatctttAGATTTTTGGACTATAAATGAGACAAAAgcaatttttttgcagtgcattagTCGAAGGAACACTGTGTTTTATAACTACGGGATGCTGATAAACTAGAGTTTAAATTATGCACTGTTATTGCATGTGTTGTTTTAGCGTTTTTATATATTAGTGCCTTTGGATCTGCATGAAAAGGTCTGGCTTTTAATGGAAGAAGTGTTAGGTTCTTTTTTGAGAACTGAAATGGTGAACTTATATATAGGAGGACAGGTTTTGCCCTCCCTAAGATgtgtactttagttttttttttttttttttggatgcatTTTCTGTAATATAAACTATTTTTTGGAAAAATTCTTTaggtcatttttaataaaaagctgaaaataa

Function

GO:

id name namespace
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0061959 response to (R)-carnitine biological_process
GO:0006094 gluconeogenesis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004346 glucose-6-phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010719 lncRNA upstream 62422 5981264 ~ 5981577 (+) True XLOC_004507
TCONS_00010880 lncRNA upstream 1208685 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00010879 lncRNA upstream 1292147 4748571 ~ 4751852 (+) True XLOC_004484
TCONS_00010878 lncRNA upstream 1309011 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00010877 lncRNA upstream 1570851 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010881 lncRNA downstream 96419 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00010882 lncRNA downstream 96419 6144705 ~ 6152579 (+) True XLOC_004512
TCONS_00010720 lncRNA downstream 100721 6149007 ~ 6153121 (+) True XLOC_004513
TCONS_00010883 lncRNA downstream 108677 6156963 ~ 6170913 (+) False XLOC_004514
TCONS_00010884 lncRNA downstream 121296 6169582 ~ 6171928 (+) True XLOC_004514
TCONS_00008992 mRNA upstream 37134 6002715 ~ 6006865 (+) True XLOC_004508
TCONS_00008991 mRNA upstream 62422 5977777 ~ 5981577 (+) False XLOC_004507
TCONS_00008990 mRNA upstream 233720 5775853 ~ 5810279 (+) True XLOC_004506
TCONS_00008989 mRNA upstream 332079 5708400 ~ 5711920 (+) True XLOC_004505
TCONS_00008988 mRNA upstream 461939 5530247 ~ 5582060 (+) True XLOC_004504
TCONS_00008997 mRNA downstream 17375 6065661 ~ 6114296 (+) False XLOC_004510
TCONS_00008998 mRNA downstream 50427 6098713 ~ 6102809 (+) False XLOC_004510
TCONS_00008999 mRNA downstream 54185 6102471 ~ 6113343 (+) True XLOC_004510
TCONS_00009000 mRNA downstream 69396 6117682 ~ 6142673 (+) True XLOC_004511
TCONS_00009002 mRNA downstream 146905 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00008977 other upstream 954069 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 982302 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 986643 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 991421 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008972 other upstream 992302 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00009009 other downstream 659843 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00009013 other downstream 1371746 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 1512779 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 1684248 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 4086080 10134366 ~ 10145811 (+) False XLOC_004553

Expression Profile

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