Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008998 |
| length | 693 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 2 |
| gene id | XLOC_004510 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 6065661 ~ 6114296 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046513 | ceramide biosynthetic process | biological_process |
| GO:0030148 | sphingolipid biosynthetic process | biological_process |
| GO:0006686 | sphingomyelin biosynthetic process | biological_process |
| GO:0030173 | integral component of Golgi membrane | cellular_component |
| GO:0030176 | integral component of endoplasmic reticulum membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0033188 | sphingomyelin synthase activity | molecular_function |
| GO:0047493 | ceramide cholinephosphotransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-061103-295 | Predicted to enable ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin biosynthetic process. Predicted to act upstream of or within sphingolipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane; integral component of endoplasmic reticulum membrane; and integral component of plasma membrane. Orthologous to human SGMS1 (sphingomyelin synthase 1). |
| ensembl_id | ENSDART00000139054 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008994 | lncRNA | upstream | 50427 | 6041578 ~ 6048286 (+) | False | XLOC_004509 |
| TCONS_00008996 | lncRNA | upstream | 50427 | 6043999 ~ 6048286 (+) | True | XLOC_004509 |
| TCONS_00008995 | lncRNA | upstream | 53832 | 6041593 ~ 6044881 (+) | False | XLOC_004509 |
| TCONS_00010719 | lncRNA | upstream | 117136 | 5981264 ~ 5981577 (+) | True | XLOC_004507 |
| TCONS_00010880 | lncRNA | upstream | 1263399 | 4834849 ~ 4835314 (+) | True | XLOC_004485 |
| TCONS_00010881 | lncRNA | downstream | 41896 | 6144705 ~ 6145821 (+) | False | XLOC_004512 |
| TCONS_00010882 | lncRNA | downstream | 41896 | 6144705 ~ 6152579 (+) | True | XLOC_004512 |
| TCONS_00010720 | lncRNA | downstream | 46198 | 6149007 ~ 6153121 (+) | True | XLOC_004513 |
| TCONS_00010883 | lncRNA | downstream | 54154 | 6156963 ~ 6170913 (+) | False | XLOC_004514 |
| TCONS_00010884 | lncRNA | downstream | 66773 | 6169582 ~ 6171928 (+) | True | XLOC_004514 |
| TCONS_00008993 | mRNA | upstream | 50427 | 6041575 ~ 6048286 (+) | False | XLOC_004509 |
| TCONS_00008992 | mRNA | upstream | 91848 | 6002715 ~ 6006865 (+) | True | XLOC_004508 |
| TCONS_00008991 | mRNA | upstream | 117136 | 5977777 ~ 5981577 (+) | False | XLOC_004507 |
| TCONS_00008990 | mRNA | upstream | 288434 | 5775853 ~ 5810279 (+) | True | XLOC_004506 |
| TCONS_00008989 | mRNA | upstream | 386793 | 5708400 ~ 5711920 (+) | True | XLOC_004505 |
| TCONS_00009000 | mRNA | downstream | 14873 | 6117682 ~ 6142673 (+) | True | XLOC_004511 |
| TCONS_00009002 | mRNA | downstream | 92382 | 6195191 ~ 6450836 (+) | False | XLOC_004515 |
| TCONS_00009001 | mRNA | downstream | 92382 | 6195191 ~ 6450836 (+) | False | XLOC_004515 |
| TCONS_00009004 | mRNA | downstream | 111232 | 6214041 ~ 6450836 (+) | False | XLOC_004515 |
| TCONS_00009005 | mRNA | downstream | 288434 | 6391243 ~ 6451609 (+) | False | XLOC_004515 |
| TCONS_00008977 | other | upstream | 1008783 | 5089815 ~ 5089930 (+) | True | XLOC_004497 |
| TCONS_00008975 | other | upstream | 1037016 | 5061567 ~ 5061697 (+) | True | XLOC_004495 |
| TCONS_00008974 | other | upstream | 1041357 | 5057221 ~ 5057356 (+) | True | XLOC_004494 |
| TCONS_00008973 | other | upstream | 1046135 | 5052443 ~ 5052578 (+) | True | XLOC_004493 |
| TCONS_00008972 | other | upstream | 1047016 | 5051562 ~ 5051697 (+) | True | XLOC_004492 |
| TCONS_00009009 | other | downstream | 605320 | 6708129 ~ 6708243 (+) | True | XLOC_004517 |
| TCONS_00009013 | other | downstream | 1317223 | 7420032 ~ 7420148 (+) | True | XLOC_004520 |
| TCONS_00009018 | other | downstream | 1458256 | 7561065 ~ 7561202 (+) | True | XLOC_004522 |
| TCONS_00009019 | other | downstream | 1629725 | 7732534 ~ 7732650 (+) | True | XLOC_004523 |
| TCONS_00009055 | other | downstream | 4031557 | 10134366 ~ 10145811 (+) | False | XLOC_004553 |
