RNA id: TCONS_00008999


Basic Information

Item Value
RNA id TCONS_00008999
length 1219
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_004510
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6065661 ~ 6114296 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAATAAAGTAGCGGCGTGGTCAGAGGACGAGGTCTCGCTCTGGCTGACCGATCAGGGTTTGCAGGAGTACTCGGAAGCACTGCGAAAATATGACGGACTGGCTTTATTAAATCTTACAACAGAAGACTTCAAGAGGACTCCTCTCTCTAGAGTCACTTCAGACGGCGGTCGTCTACTATTGGAAAAGATCGAGACTCTTAAGATCGAGCATCACATGAATGGACACACCAATGGGCACATGGTGTTGAATCAAAACGGCAATGTCGGAAGTAGCGTCAAGGCTCAACGGAACGGCATGGCGAATGGCTTCCACAAGGAACTGGTGCAGATTCCCATGCCGGAGCCGGTTTCTCCACAGTTTCCTCCTGAATGGGGAAAGACCGCCGTGGCTCTGGTTTACGCCTTATGCTGCTTCGTGTTCACCACCGTTGTTATTTCTGTGGTTCACGAACGCGTGCCTCCTAAGGAAGAGACTCCGCCGCTCCCCGACAAGTTCTTTGACTTTTTTGGCAGGGTGGAGTGGGCTTTCACTGTGTGCGAGATCAACGGGATGGTCCTGATCGTCTTGTGGATTATACAGTGGAGTCTCTTAAAACACAAATCAATCGTTGCTCGACGCTTCTGTTTCATAGTCGGGACGCTCTACCTCTACCGGTGCATCACCATGTACATTACTACTCTTCCCGTGCCTGGCATGCACTTCAAATGCTCTCCTAAGgtgAATGGAGACTGGCAGTCTCAGATGCGGCGGGTGATGAAGTTGATCGCAGGAGGAGGTCTGACCATCACCGGCTCTCATAACATGTGCGGAGACTACTTATACAGCGGCCATACAGTCATGCTGACCCTCACCTATCTCTTCATCAAGGAGTATTCTCCCAGAAGGTTCTGGTGGTTTCACTGGGGCTGCTGGTCTTTGTGTGCGGTCGGAGTGTTCTGCATCCTCCTGGCTCATGACCATTACACCATTGACGTTGTCGTGGCCTACTTCATCACCACACGCCTTTTCTGGTGGTATCACACTATGGCCAACCAACAAGTGCTCAAAGAAACATCACAAAGCAACTTCTTCGCCAATGTGTGGTGGTATCGATTTTTCCAGTACCTAGAAAGCAATGTTCCTGCCGTTGTTCCACGTCACTACCAGAAACCCTTTTCATGGCGATTGCTGCACTGGAGCCATGTCAAATACACACGGATAGACTCCGATTGACTAG

Function

GO:

id name namespace
GO:0046513 ceramide biosynthetic process biological_process
GO:0030148 sphingolipid biosynthetic process biological_process
GO:0006686 sphingomyelin biosynthetic process biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0033188 sphingomyelin synthase activity molecular_function
GO:0047493 ceramide cholinephosphotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-295 Predicted to enable ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin biosynthetic process. Predicted to act upstream of or within sphingolipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane; integral component of endoplasmic reticulum membrane; and integral component of plasma membrane. Orthologous to human SGMS1 (sphingomyelin synthase 1).

Ensembl:

ensembl_id ENSDART00000164885

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008994 lncRNA upstream 54185 6041578 ~ 6048286 (+) False XLOC_004509
TCONS_00008996 lncRNA upstream 54185 6043999 ~ 6048286 (+) True XLOC_004509
TCONS_00008995 lncRNA upstream 57590 6041593 ~ 6044881 (+) False XLOC_004509
TCONS_00010719 lncRNA upstream 120894 5981264 ~ 5981577 (+) True XLOC_004507
TCONS_00010880 lncRNA upstream 1267157 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00010881 lncRNA downstream 31362 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00010882 lncRNA downstream 31362 6144705 ~ 6152579 (+) True XLOC_004512
TCONS_00010720 lncRNA downstream 35664 6149007 ~ 6153121 (+) True XLOC_004513
TCONS_00010883 lncRNA downstream 43620 6156963 ~ 6170913 (+) False XLOC_004514
TCONS_00010884 lncRNA downstream 56239 6169582 ~ 6171928 (+) True XLOC_004514
TCONS_00008993 mRNA upstream 54185 6041575 ~ 6048286 (+) False XLOC_004509
TCONS_00008992 mRNA upstream 95606 6002715 ~ 6006865 (+) True XLOC_004508
TCONS_00008991 mRNA upstream 120894 5977777 ~ 5981577 (+) False XLOC_004507
TCONS_00008990 mRNA upstream 292192 5775853 ~ 5810279 (+) True XLOC_004506
TCONS_00008989 mRNA upstream 390551 5708400 ~ 5711920 (+) True XLOC_004505
TCONS_00009000 mRNA downstream 4339 6117682 ~ 6142673 (+) True XLOC_004511
TCONS_00009002 mRNA downstream 81848 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009001 mRNA downstream 81848 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009004 mRNA downstream 100698 6214041 ~ 6450836 (+) False XLOC_004515
TCONS_00009005 mRNA downstream 277900 6391243 ~ 6451609 (+) False XLOC_004515
TCONS_00008977 other upstream 1012541 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 1040774 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 1045115 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 1049893 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008972 other upstream 1050774 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00009009 other downstream 594786 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00009013 other downstream 1306689 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 1447722 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 1619191 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 4021023 10134366 ~ 10145811 (+) False XLOC_004553

Expression Profile

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