RNA id: TCONS_00010882


Basic Information

Item Value
RNA id TCONS_00010882
length 858
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_004512
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6144705 ~ 6152579 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttttttggGTCATTTTAATTTCTACAGAAATTAAATGACACAAAAACAGTAATCAGAAACTAgtgctttatttgtttttcaaatgaatAAGAAGTTGTGGCACTTGTGACGGGGCAGATTTCGTTGGAACGGCCCATTCTATGTGACAAAAACAGCAGTCAAAGTTTTGGAGCTGGACTGGCTGAAGGCTGGTCAAAAGAGCACTGTAGTTTGCCAGTGATGCAGTCATATTTAACTGGCCGATGCTTGGGCTTTAAAACTCCGTCAGCTGTTGGAGAGCTGGAATGAAGCAGAGTTGGCCACAAAAAAATCCATGATTAAAGTAATATTTCAAAACCATCTTAATTAAAAcctaatgaattattatttaccATATTCAATTATCTGTAAGCAGTGACTAGGCTTCCTTAGCTGTTGTCATTTGAAGAGACCTAAACAGAAGCCTTTGATGCACAACAAGAAACAGAGAAGATACATATTATCAATTGATTACAAGGATTTGCACAATGACCGTTTAATAGATGCTAAACAAATTTGTAACACTCAGATTATGCAGTAATTGAATTTGTGGTGAATTTACCTTATTAATTTATCAGTCTGCGTTGACCTTTCTTGCCCGATGCCAGTGAGGTGACTCTAACAGCAGGACAGATGCACAACAAGAAACGGATATTAGCGATTGATTAGaaggacacacacaaacacacacacacacaggatgagAATTAAAATGAAGTTTAACAATCAGATTATGTGGGATCTAAATTTACCTTGGTAGTTTATCGGTGTGCAGTGACTGACTTTTCCAGCTCGTTGTCATTGAGGTGACTCAAAAAGCAGCACAGATGCACATTAAG

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process biological_process
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process biological_process
GO:0006558 L-phenylalanine metabolic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0004175 endopeptidase activity molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0071916 dipeptide transmembrane transporter activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008994 lncRNA upstream 96419 6041578 ~ 6048286 (+) False XLOC_004509
TCONS_00008996 lncRNA upstream 96419 6043999 ~ 6048286 (+) True XLOC_004509
TCONS_00008995 lncRNA upstream 99824 6041593 ~ 6044881 (+) False XLOC_004509
TCONS_00010719 lncRNA upstream 163128 5981264 ~ 5981577 (+) True XLOC_004507
TCONS_00010880 lncRNA upstream 1309391 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00010883 lncRNA downstream 4384 6156963 ~ 6170913 (+) False XLOC_004514
TCONS_00010884 lncRNA downstream 17003 6169582 ~ 6171928 (+) True XLOC_004514
TCONS_00010721 lncRNA downstream 42591 6195170 ~ 6235345 (+) False XLOC_004515
TCONS_00009003 lncRNA downstream 42620 6195199 ~ 6217715 (+) False XLOC_004515
TCONS_00009006 lncRNA downstream 292088 6444667 ~ 6447817 (+) True XLOC_004515
TCONS_00009000 mRNA upstream 2032 6117682 ~ 6142673 (+) True XLOC_004511
TCONS_00008997 mRNA upstream 30409 6065661 ~ 6114296 (+) False XLOC_004510
TCONS_00008999 mRNA upstream 31362 6102471 ~ 6113343 (+) True XLOC_004510
TCONS_00008998 mRNA upstream 41896 6098713 ~ 6102809 (+) False XLOC_004510
TCONS_00008993 mRNA upstream 96419 6041575 ~ 6048286 (+) False XLOC_004509
TCONS_00009002 mRNA downstream 42612 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009001 mRNA downstream 42612 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009004 mRNA downstream 61462 6214041 ~ 6450836 (+) False XLOC_004515
TCONS_00009005 mRNA downstream 238664 6391243 ~ 6451609 (+) False XLOC_004515
TCONS_00009007 mRNA downstream 312978 6465557 ~ 6467419 (+) False XLOC_004516
TCONS_00008977 other upstream 1054775 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 1083008 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 1087349 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 1092127 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008972 other upstream 1093008 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00009009 other downstream 555550 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00009013 other downstream 1267453 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 1408486 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 1579955 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 3981787 10134366 ~ 10145811 (+) False XLOC_004553

Expression Profile

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