RNA id: TCONS_00010720


Basic Information

Item Value
RNA id TCONS_00010720
length 246
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id XLOC_004513
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6149007 ~ 6153121 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTGAACATTCTTGCTCGTTACCAGATGTGCAGTAACAAACAGAGAAGATACAGTAAATGTAGAGATTGTTCAGAAGGAAATAATCATCCAGATTATGgcataataataataataataataataataataataataatgtgtgttaTTGAATTTACTGTGTTCATTTATAAGTGTGCAGCTACTGACCTTTCCTGCCTGCTGTCAATTGAAGTGACTCAAACAGTGGCACAGATGCACAACAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010881 lncRNA upstream 3186 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00008994 lncRNA upstream 100721 6041578 ~ 6048286 (+) False XLOC_004509
TCONS_00008996 lncRNA upstream 100721 6043999 ~ 6048286 (+) True XLOC_004509
TCONS_00008995 lncRNA upstream 104126 6041593 ~ 6044881 (+) False XLOC_004509
TCONS_00010719 lncRNA upstream 167430 5981264 ~ 5981577 (+) True XLOC_004507
TCONS_00010883 lncRNA downstream 3842 6156963 ~ 6170913 (+) False XLOC_004514
TCONS_00010884 lncRNA downstream 16461 6169582 ~ 6171928 (+) True XLOC_004514
TCONS_00010721 lncRNA downstream 42049 6195170 ~ 6235345 (+) False XLOC_004515
TCONS_00009003 lncRNA downstream 42078 6195199 ~ 6217715 (+) False XLOC_004515
TCONS_00009006 lncRNA downstream 291546 6444667 ~ 6447817 (+) True XLOC_004515
TCONS_00009000 mRNA upstream 6334 6117682 ~ 6142673 (+) True XLOC_004511
TCONS_00008997 mRNA upstream 34711 6065661 ~ 6114296 (+) False XLOC_004510
TCONS_00008999 mRNA upstream 35664 6102471 ~ 6113343 (+) True XLOC_004510
TCONS_00008998 mRNA upstream 46198 6098713 ~ 6102809 (+) False XLOC_004510
TCONS_00008993 mRNA upstream 100721 6041575 ~ 6048286 (+) False XLOC_004509
TCONS_00009002 mRNA downstream 42070 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009001 mRNA downstream 42070 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009004 mRNA downstream 60920 6214041 ~ 6450836 (+) False XLOC_004515
TCONS_00009005 mRNA downstream 238122 6391243 ~ 6451609 (+) False XLOC_004515
TCONS_00009007 mRNA downstream 312436 6465557 ~ 6467419 (+) False XLOC_004516
TCONS_00008977 other upstream 1059077 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 1087310 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 1091651 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 1096429 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008972 other upstream 1097310 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00009009 other downstream 555008 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00009013 other downstream 1266911 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 1407944 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 1579413 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 3981245 10134366 ~ 10145811 (+) False XLOC_004553

Expression Profile

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