RNA id: TCONS_00010883


Basic Information

Item Value
RNA id TCONS_00010883
length 1038
lncRNA type read_through
GC content 0.43
exon number 2
gene id XLOC_004514
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6156963 ~ 6171928 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctcatcgtcatgttcaagaaaccagtctgagatgatttgtgcatttttgacatggcacgttatccagctgaaagtagccatcagaagatgggaacactgtggtcataaagggatggacatggtcaacaactcttctcagTCTCCTCTGTGGTGGGCAACATCAGATTACGAACATAGAGAATCTTCACTGTGGCCATGGTGTCCTCGTCTACCTCCACTTCAGGTTCAGCCCAGTCGACTGCAATAGGATGACCCCACAGCTGAATCCTTCCtggaaagagaagaaaaaatggTGTTGGTGGCTGGTCTTTTTTATCTCTCACTCATCTCTTCTGGGCAATGAACTAAGTATCTTTGGACCCAACATGAGTTCAGCCTGAGGGAAATCAATAAAACCATGCCTTGTTCTGGAAACTGATAATTGCCTTGAAATGTGTCAGTACATTGGGAACAGACGTGGAAGTGCTTTCTGGGCAAGAAAACTAGGATAATATCAAATGGagttgaacatttttttgtttgtatttttgtttcaCCTGGGAGCAGTTTCCTCCTGGCCATGGCGGCAGCTCTGTGGGTCTCATATTCCACAAATGCAAAACCTCGGTTCTTGGCCTTGTCAGCAGCACTTGGGTAAACGATGACATCCAAGACACCATCCGTCACTTTCTTCATCTCTGCCAGGATCTCTTCTCTCTTTTTGGTTTTTGGAATACCACCCACAAATAGACGACAGTTGTCTACACTTGCACACACGCCCAGAAGCCTTCCATTCCTGCATGAAGATGTGTGAGAACTGTCAGTTTTCTGGTCAGAAAATGCTTTTTCAACTACTGTAGATATCCAATGACTCACCGGATTTCATAGTTGTTGAGCTGTTTCATGGCATTCTTAGCTTCTTGTTTTGTGGAGAAGGTAACGAATGCATAGCCTCGATTGTTGCCATTGAAGTCCATCATCATCCGTACTTCGTAAATTTTGCCAAACTGTAAAGAAAGGTAAGTGTAACTATAAATTCACTGCATTCAAATGTCTTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010720 lncRNA upstream 3842 6149007 ~ 6153121 (+) True XLOC_004513
TCONS_00010882 lncRNA upstream 4384 6144705 ~ 6152579 (+) True XLOC_004512
TCONS_00010881 lncRNA upstream 11142 6144705 ~ 6145821 (+) False XLOC_004512
TCONS_00008994 lncRNA upstream 108677 6041578 ~ 6048286 (+) False XLOC_004509
TCONS_00008996 lncRNA upstream 108677 6043999 ~ 6048286 (+) True XLOC_004509
TCONS_00010721 lncRNA downstream 24257 6195170 ~ 6235345 (+) False XLOC_004515
TCONS_00009003 lncRNA downstream 24286 6195199 ~ 6217715 (+) False XLOC_004515
TCONS_00009006 lncRNA downstream 273754 6444667 ~ 6447817 (+) True XLOC_004515
TCONS_00010885 lncRNA downstream 1628888 7799801 ~ 7841013 (+) True XLOC_004524
TCONS_00010722 lncRNA downstream 1872608 8043521 ~ 8046466 (+) True XLOC_004527
TCONS_00009000 mRNA upstream 14290 6117682 ~ 6142673 (+) True XLOC_004511
TCONS_00008997 mRNA upstream 42667 6065661 ~ 6114296 (+) False XLOC_004510
TCONS_00008999 mRNA upstream 43620 6102471 ~ 6113343 (+) True XLOC_004510
TCONS_00008998 mRNA upstream 54154 6098713 ~ 6102809 (+) False XLOC_004510
TCONS_00008993 mRNA upstream 108677 6041575 ~ 6048286 (+) False XLOC_004509
TCONS_00009002 mRNA downstream 24278 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009001 mRNA downstream 24278 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009004 mRNA downstream 43128 6214041 ~ 6450836 (+) False XLOC_004515
TCONS_00009005 mRNA downstream 220330 6391243 ~ 6451609 (+) False XLOC_004515
TCONS_00009007 mRNA downstream 294644 6465557 ~ 6467419 (+) False XLOC_004516
TCONS_00008977 other upstream 1067033 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 1095266 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 1099607 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 1104385 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008972 other upstream 1105266 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00009009 other downstream 537216 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00009013 other downstream 1249119 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 1390152 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 1561621 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 3963453 10134366 ~ 10145811 (+) False XLOC_004553

Expression Profile

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