Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009007 |
| length | 894 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 4 |
| gene id | XLOC_004516 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 6465557 ~ 6467675 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0030178 | negative regulation of Wnt signaling pathway | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0021879 | forebrain neuron differentiation | biological_process |
| GO:0090090 | negative regulation of canonical Wnt signaling pathway | biological_process |
| GO:0003197 | endocardial cushion development | biological_process |
| GO:0043697 | cell dedifferentiation | biological_process |
| GO:0061011 | hepatic duct development | biological_process |
| GO:0070654 | sensory epithelium regeneration | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0048919 | posterior lateral line neuromast development | biological_process |
| GO:0007398 | ectoderm development | biological_process |
| GO:0030900 | forebrain development | biological_process |
| GO:0030334 | regulation of cell migration | biological_process |
| GO:0030903 | notochord development | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0039706 | co-receptor binding | molecular_function |
| GO:0048019 | receptor antagonist activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990708-5 | Predicted to enable co-receptor binding activity and receptor antagonist activity. Acts upstream of or within several processes, including animal organ development; hepatic duct development; and sensory epithelium regeneration. Located in cytoplasm and extracellular region. Is expressed in several structures, including embryonic structure; median fin fold; mesoderm; pharyngeal arch; and sensory system. Human ortholog(s) of this gene implicated in anodontia. Orthologous to human DKK1 (dickkopf WNT signaling pathway inhibitor 1). |
| ensembl_id | ENSDART00000066477 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00009006 | lncRNA | upstream | 17740 | 6444667 ~ 6447817 (+) | True | XLOC_004515 |
| TCONS_00010721 | lncRNA | upstream | 230212 | 6195170 ~ 6235345 (+) | False | XLOC_004515 |
| TCONS_00009003 | lncRNA | upstream | 247842 | 6195199 ~ 6217715 (+) | False | XLOC_004515 |
| TCONS_00010884 | lncRNA | upstream | 293629 | 6169582 ~ 6171928 (+) | True | XLOC_004514 |
| TCONS_00010883 | lncRNA | upstream | 294644 | 6156963 ~ 6170913 (+) | False | XLOC_004514 |
| TCONS_00010885 | lncRNA | downstream | 1332382 | 7799801 ~ 7841013 (+) | True | XLOC_004524 |
| TCONS_00010722 | lncRNA | downstream | 1576102 | 8043521 ~ 8046466 (+) | True | XLOC_004527 |
| TCONS_00010887 | lncRNA | downstream | 2010028 | 8477447 ~ 8480465 (+) | False | XLOC_004531 |
| TCONS_00010886 | lncRNA | downstream | 2010028 | 8477447 ~ 8480465 (+) | True | XLOC_004531 |
| TCONS_00010888 | lncRNA | downstream | 2060149 | 8527568 ~ 8534915 (+) | True | XLOC_004532 |
| TCONS_00009005 | mRNA | upstream | 13948 | 6391243 ~ 6451609 (+) | False | XLOC_004515 |
| TCONS_00009002 | mRNA | upstream | 14721 | 6195191 ~ 6450836 (+) | False | XLOC_004515 |
| TCONS_00009001 | mRNA | upstream | 14721 | 6195191 ~ 6450836 (+) | False | XLOC_004515 |
| TCONS_00009004 | mRNA | upstream | 14721 | 6214041 ~ 6450836 (+) | False | XLOC_004515 |
| TCONS_00009000 | mRNA | upstream | 322884 | 6117682 ~ 6142673 (+) | True | XLOC_004511 |
| TCONS_00009010 | mRNA | downstream | 786693 | 7254112 ~ 7263958 (+) | True | XLOC_004518 |
| TCONS_00009011 | mRNA | downstream | 931984 | 7399403 ~ 7423438 (+) | False | XLOC_004519 |
| TCONS_00009012 | mRNA | downstream | 938899 | 7406318 ~ 7429824 (+) | True | XLOC_004519 |
| TCONS_00009014 | mRNA | downstream | 978176 | 7445595 ~ 7512766 (+) | False | XLOC_004521 |
| TCONS_00009015 | mRNA | downstream | 978214 | 7445633 ~ 7454638 (+) | False | XLOC_004521 |
| TCONS_00008977 | other | upstream | 1375627 | 5089815 ~ 5089930 (+) | True | XLOC_004497 |
| TCONS_00008975 | other | upstream | 1403860 | 5061567 ~ 5061697 (+) | True | XLOC_004495 |
| TCONS_00008974 | other | upstream | 1408201 | 5057221 ~ 5057356 (+) | True | XLOC_004494 |
| TCONS_00008973 | other | upstream | 1412979 | 5052443 ~ 5052578 (+) | True | XLOC_004493 |
| TCONS_00008972 | other | upstream | 1413860 | 5051562 ~ 5051697 (+) | True | XLOC_004492 |
| TCONS_00009009 | other | downstream | 240710 | 6708129 ~ 6708243 (+) | True | XLOC_004517 |
| TCONS_00009013 | other | downstream | 952613 | 7420032 ~ 7420148 (+) | True | XLOC_004520 |
| TCONS_00009018 | other | downstream | 1093646 | 7561065 ~ 7561202 (+) | True | XLOC_004522 |
| TCONS_00009019 | other | downstream | 1265115 | 7732534 ~ 7732650 (+) | True | XLOC_004523 |
| TCONS_00009055 | other | downstream | 3666947 | 10134366 ~ 10145811 (+) | False | XLOC_004553 |
