RNA id: TCONS_00009009


Basic Information

Item Value
RNA id TCONS_00009009
length 115
RNA type rRNA
GC content 0.60
exon number 1
gene id XLOC_004517
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6708129 ~ 6708243 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gccggcagctagctctcagCAACTCTCGCATGGTCAcaaactgaagctaagcagggctgcgcccagtcagtgCCTGGATggcagaccacatgggaaagccaaGTTGCTGCCGGag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000183962

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009006 lncRNA upstream 260312 6444667 ~ 6447817 (+) True XLOC_004515
TCONS_00010721 lncRNA upstream 472784 6195170 ~ 6235345 (+) False XLOC_004515
TCONS_00009003 lncRNA upstream 490414 6195199 ~ 6217715 (+) False XLOC_004515
TCONS_00010884 lncRNA upstream 536201 6169582 ~ 6171928 (+) True XLOC_004514
TCONS_00010883 lncRNA upstream 537216 6156963 ~ 6170913 (+) False XLOC_004514
TCONS_00010885 lncRNA downstream 1091558 7799801 ~ 7841013 (+) True XLOC_004524
TCONS_00010722 lncRNA downstream 1335278 8043521 ~ 8046466 (+) True XLOC_004527
TCONS_00010887 lncRNA downstream 1769204 8477447 ~ 8480465 (+) False XLOC_004531
TCONS_00010886 lncRNA downstream 1769204 8477447 ~ 8480465 (+) True XLOC_004531
TCONS_00010888 lncRNA downstream 1819325 8527568 ~ 8534915 (+) True XLOC_004532
TCONS_00009008 mRNA upstream 240454 6465571 ~ 6467675 (+) True XLOC_004516
TCONS_00009007 mRNA upstream 240710 6465557 ~ 6467419 (+) False XLOC_004516
TCONS_00009005 mRNA upstream 256520 6391243 ~ 6451609 (+) False XLOC_004515
TCONS_00009002 mRNA upstream 257293 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009001 mRNA upstream 257293 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009010 mRNA downstream 545869 7254112 ~ 7263958 (+) True XLOC_004518
TCONS_00009011 mRNA downstream 691160 7399403 ~ 7423438 (+) False XLOC_004519
TCONS_00009012 mRNA downstream 698075 7406318 ~ 7429824 (+) True XLOC_004519
TCONS_00009014 mRNA downstream 737352 7445595 ~ 7512766 (+) False XLOC_004521
TCONS_00009015 mRNA downstream 737390 7445633 ~ 7454638 (+) False XLOC_004521
TCONS_00008977 other upstream 1618199 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 1646432 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 1650773 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 1655551 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008972 other upstream 1656432 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00009013 other downstream 711789 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009018 other downstream 852822 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 1024291 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 3426123 10134366 ~ 10145811 (+) False XLOC_004553
TCONS_00009060 other downstream 3502689 10210932 ~ 10211048 (+) True XLOC_004556