RNA id: TCONS_00009013


Basic Information

Item Value
RNA id TCONS_00009013
length 117
RNA type rRNA
GC content 0.53
exon number 1
gene id XLOC_004520
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7420032 ~ 7420148 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGGgtgccatatcaccctgcagcccaagaccagatactcactgaagctaagcagggctgagcctggtcagtacctggatgggagaccacttgggaaaactagattgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179630

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009006 lncRNA upstream 972215 6444667 ~ 6447817 (+) True XLOC_004515
TCONS_00010721 lncRNA upstream 1184687 6195170 ~ 6235345 (+) False XLOC_004515
TCONS_00009003 lncRNA upstream 1202317 6195199 ~ 6217715 (+) False XLOC_004515
TCONS_00010884 lncRNA upstream 1248104 6169582 ~ 6171928 (+) True XLOC_004514
TCONS_00010883 lncRNA upstream 1249119 6156963 ~ 6170913 (+) False XLOC_004514
TCONS_00010885 lncRNA downstream 379653 7799801 ~ 7841013 (+) True XLOC_004524
TCONS_00010722 lncRNA downstream 623373 8043521 ~ 8046466 (+) True XLOC_004527
TCONS_00010887 lncRNA downstream 1057299 8477447 ~ 8480465 (+) False XLOC_004531
TCONS_00010886 lncRNA downstream 1057299 8477447 ~ 8480465 (+) True XLOC_004531
TCONS_00010888 lncRNA downstream 1107420 8527568 ~ 8534915 (+) True XLOC_004532
TCONS_00009010 mRNA upstream 156074 7254112 ~ 7263958 (+) True XLOC_004518
TCONS_00009008 mRNA upstream 952357 6465571 ~ 6467675 (+) True XLOC_004516
TCONS_00009007 mRNA upstream 952613 6465557 ~ 6467419 (+) False XLOC_004516
TCONS_00009005 mRNA upstream 968423 6391243 ~ 6451609 (+) False XLOC_004515
TCONS_00009001 mRNA upstream 969196 6195191 ~ 6450836 (+) False XLOC_004515
TCONS_00009014 mRNA downstream 25447 7445595 ~ 7512766 (+) False XLOC_004521
TCONS_00009015 mRNA downstream 25485 7445633 ~ 7454638 (+) False XLOC_004521
TCONS_00009016 mRNA downstream 71542 7491690 ~ 7512250 (+) False XLOC_004521
TCONS_00009017 mRNA downstream 77734 7497882 ~ 7513794 (+) True XLOC_004521
TCONS_00009020 mRNA downstream 445322 7865470 ~ 7870791 (+) True XLOC_004525
TCONS_00009009 other upstream 711789 6708129 ~ 6708243 (+) True XLOC_004517
TCONS_00008977 other upstream 2330102 5089815 ~ 5089930 (+) True XLOC_004497
TCONS_00008975 other upstream 2358335 5061567 ~ 5061697 (+) True XLOC_004495
TCONS_00008974 other upstream 2362676 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008973 other upstream 2367454 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00009018 other downstream 140917 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009019 other downstream 312386 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009055 other downstream 2714218 10134366 ~ 10145811 (+) False XLOC_004553
TCONS_00009060 other downstream 2790784 10210932 ~ 10211048 (+) True XLOC_004556
TCONS_00009076 other downstream 4223403 11643551 ~ 11643671 (+) True XLOC_004565

Expression Profile

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