Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009055 |
| length | 724 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.48 |
| exon number | 5 |
| gene id | XLOC_004553 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 10134366 ~ 10160941 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0002244 | hematopoietic progenitor cell differentiation | biological_process |
| GO:0006337 | nucleosome disassembly | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0043044 | ATP-dependent chromatin remodeling | biological_process |
| GO:0030223 | neutrophil differentiation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0016514 | SWI/SNF complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080215-1 | Predicted to enable transcription coregulator activity. Acts upstream of or within hematopoietic progenitor cell differentiation and neutrophil differentiation. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Orthologous to human SMARCD2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2). |
| ensembl_id | ENSDART00000152212 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010897 | lncRNA | upstream | 183877 | 9941133 ~ 9950489 (+) | True | XLOC_004550 |
| TCONS_00010896 | lncRNA | upstream | 321880 | 9797037 ~ 9812486 (+) | True | XLOC_004546 |
| TCONS_00010895 | lncRNA | upstream | 357037 | 9769918 ~ 9777329 (+) | False | XLOC_004545 |
| TCONS_00010894 | lncRNA | upstream | 357037 | 9769918 ~ 9777329 (+) | True | XLOC_004545 |
| TCONS_00010893 | lncRNA | upstream | 430475 | 9703175 ~ 9703891 (+) | False | XLOC_004545 |
| TCONS_00009058 | lncRNA | downstream | 17830 | 10163641 ~ 10167477 (+) | True | XLOC_004554 |
| TCONS_00009063 | lncRNA | downstream | 302431 | 10448242 ~ 10448831 (+) | True | XLOC_004558 |
| TCONS_00009075 | lncRNA | downstream | 1213390 | 11359201 ~ 11363061 (+) | True | XLOC_004564 |
| TCONS_00010724 | lncRNA | downstream | 2269445 | 12415256 ~ 12415835 (+) | True | XLOC_004568 |
| TCONS_00009084 | lncRNA | downstream | 2948505 | 13094316 ~ 13095670 (+) | True | XLOC_004570 |
| TCONS_00009053 | mRNA | upstream | 8589 | 10115964 ~ 10125777 (+) | False | XLOC_004552 |
| TCONS_00009054 | mRNA | upstream | 11728 | 10116912 ~ 10122638 (+) | True | XLOC_004552 |
| TCONS_00009051 | mRNA | upstream | 33862 | 10053852 ~ 10100504 (+) | False | XLOC_004551 |
| TCONS_00009052 | mRNA | upstream | 65202 | 10062953 ~ 10069164 (+) | True | XLOC_004551 |
| TCONS_00009050 | mRNA | upstream | 250040 | 9880493 ~ 9884326 (+) | True | XLOC_004549 |
| TCONS_00009057 | mRNA | downstream | 17774 | 10163585 ~ 10175487 (+) | False | XLOC_004554 |
| TCONS_00009059 | mRNA | downstream | 33641 | 10179452 ~ 10193551 (+) | True | XLOC_004555 |
| TCONS_00009061 | mRNA | downstream | 297974 | 10443785 ~ 10447178 (+) | True | XLOC_004557 |
| TCONS_00009062 | mRNA | downstream | 302415 | 10448226 ~ 10462503 (+) | False | XLOC_004558 |
| TCONS_00009064 | mRNA | downstream | 453793 | 10599604 ~ 10609781 (+) | True | XLOC_004559 |
| TCONS_00009019 | other | upstream | 2401716 | 7732534 ~ 7732650 (+) | True | XLOC_004523 |
| TCONS_00009018 | other | upstream | 2573164 | 7561065 ~ 7561202 (+) | True | XLOC_004522 |
| TCONS_00009013 | other | upstream | 2714218 | 7420032 ~ 7420148 (+) | True | XLOC_004520 |
| TCONS_00009009 | other | upstream | 3426123 | 6708129 ~ 6708243 (+) | True | XLOC_004517 |
| TCONS_00008977 | other | upstream | 5044436 | 5089815 ~ 5089930 (+) | True | XLOC_004497 |
| TCONS_00009060 | other | downstream | 65121 | 10210932 ~ 10211048 (+) | True | XLOC_004556 |
| TCONS_00009076 | other | downstream | 1497740 | 11643551 ~ 11643671 (+) | True | XLOC_004565 |
| TCONS_00009079 | other | downstream | 2467524 | 12613335 ~ 12613451 (+) | True | XLOC_004569 |
| TCONS_00009094 | other | downstream | 3137963 | 13283774 ~ 13292767 (+) | True | XLOC_004575 |
| TCONS_00009101 | other | downstream | 3311426 | 13457237 ~ 13457356 (+) | True | XLOC_004579 |
