RNA id: TCONS_00009063


Basic Information

Item Value
RNA id TCONS_00009063
length 505
lncRNA type retained_intron
GC content 0.42
exon number 2
gene id XLOC_004558
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10448226 ~ 10462503 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaagtgaaaaaactACTGGTCAAACAACTATGAGTGACTCTTGTTTTATTGAACAAATGCGAGGTCGAACGTTTGCTCAGTTACGACGAACTAATCCCCAGACTTGAGTCTGTCATGGGAAAGTTTtctaaaagggacagttcagaAATAATCCAGCCTGTGAGATCTGTGGTCCCTATACAGCCATACAATGGGTTTTTGGGTGTGATGCCTTCATATGTGGCCGCTGATGGTATTCTATGCACTAAGATGGTAACTTTCTACCAGCGTGCAGAGGGCTCCAGTTTACCTTCAACTCAAGCCACCGTCTTACTTTTTCACCCCGAGCGAGGACACATCACTGCGGTGAGACACACAAACCACATCTGTCTGTCTCACttaatttaattgttattctggacaaactacataaatataaatgattccGATTTTGACAAATTGTCAGAAATTATGAGTGGATCTAATTGTCAAAAAACCTCCAGATCCGTGCACTGACAttggcag

Function

GO:

id name namespace
GO:0042403 thyroid hormone metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0070324 thyroid hormone binding molecular_function
GO:0042562 hormone binding molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-070112-1782 Predicted to enable thyroid hormone binding activity. Predicted to be involved in thyroid hormone metabolic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 40. Orthologous to human CRYM (crystallin mu).

Ensembl:

ensembl_id ENSDART00000152254

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009058 lncRNA upstream 280765 10163641 ~ 10167477 (+) True XLOC_004554
TCONS_00010897 lncRNA upstream 497753 9941133 ~ 9950489 (+) True XLOC_004550
TCONS_00010896 lncRNA upstream 635756 9797037 ~ 9812486 (+) True XLOC_004546
TCONS_00010895 lncRNA upstream 670913 9769918 ~ 9777329 (+) False XLOC_004545
TCONS_00010894 lncRNA upstream 670913 9769918 ~ 9777329 (+) True XLOC_004545
TCONS_00009075 lncRNA downstream 910370 11359201 ~ 11363061 (+) True XLOC_004564
TCONS_00010724 lncRNA downstream 1966425 12415256 ~ 12415835 (+) True XLOC_004568
TCONS_00009084 lncRNA downstream 2645485 13094316 ~ 13095670 (+) True XLOC_004570
TCONS_00009098 lncRNA downstream 2903430 13352261 ~ 13355576 (+) True XLOC_004577
TCONS_00009105 lncRNA downstream 3206879 13655710 ~ 13721912 (+) True XLOC_004580
TCONS_00009061 mRNA upstream 1064 10443785 ~ 10447178 (+) True XLOC_004557
TCONS_00009059 mRNA upstream 254691 10179452 ~ 10193551 (+) True XLOC_004555
TCONS_00009057 mRNA upstream 272755 10163585 ~ 10175487 (+) False XLOC_004554
TCONS_00009056 mRNA upstream 287301 10134366 ~ 10160941 (+) True XLOC_004553
TCONS_00009053 mRNA upstream 322465 10115964 ~ 10125777 (+) False XLOC_004552
TCONS_00009064 mRNA downstream 150773 10599604 ~ 10609781 (+) True XLOC_004559
TCONS_00009065 mRNA downstream 182435 10631266 ~ 10637172 (+) True XLOC_004560
TCONS_00009066 mRNA downstream 257941 10706772 ~ 10740236 (+) False XLOC_004561
TCONS_00009067 mRNA downstream 273890 10722721 ~ 10740020 (+) True XLOC_004561
TCONS_00009068 mRNA downstream 503963 10952794 ~ 11124991 (+) False XLOC_004562
TCONS_00009060 other upstream 237194 10210932 ~ 10211048 (+) True XLOC_004556
TCONS_00009055 other upstream 302431 10134366 ~ 10145811 (+) False XLOC_004553
TCONS_00009019 other upstream 2715592 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009018 other upstream 2887040 7561065 ~ 7561202 (+) True XLOC_004522
TCONS_00009013 other upstream 3028094 7420032 ~ 7420148 (+) True XLOC_004520
TCONS_00009076 other downstream 1194720 11643551 ~ 11643671 (+) True XLOC_004565
TCONS_00009079 other downstream 2164504 12613335 ~ 12613451 (+) True XLOC_004569
TCONS_00009094 other downstream 2834943 13283774 ~ 13292767 (+) True XLOC_004575
TCONS_00009101 other downstream 3008406 13457237 ~ 13457356 (+) True XLOC_004579
TCONS_00009106 other downstream 3209191 13658022 ~ 13658144 (+) True XLOC_004581

Expression Profile

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