RNA id: TCONS_00009084


Basic Information

Item Value
RNA id TCONS_00009084
length 539
lncRNA type retained_intron
GC content 0.42
exon number 3
gene id XLOC_004570
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13091842 ~ 13106963 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGGGGCAGAAGAGGACAGCCTTTTGTTGGGTCCTTCAACCAGAGGTGTCATTATCAGGCACAAAAAACTCCCATGGCTCCATGCCCTGTCTTTCGTCCCCAAAGACTCTTTTCACCCCAGCAGCAATATAACCagCCTGGAGGTTTCATGTCACCTTCCCGTCCTCCTCTCTCTACCTCAATGCCCCGCACACCCAAACTCATGCACCTGCGGTTTGGCACAGACTCTCCCAGGCCTGCTCCATTCTACAGCCCATCCGCCAGCATCATGCAGGGCTTACGGTTGGTCAACTAGTCAAGGAataattcatttactttttgtttaatCATGCATTCTTATTTTGTTAATTTGACAATTCTCATGATCATTTTATATTAGTGaatgtcaatttttattttaattttttaatcttaTGGGTATATGAAAATCcctttttattcagtgtttaacaCTGCTcgaagtgaatgaaaacatccatcttgaatttaaatctgaaagtgcacagtaTATAAAGTAGTTTGAACTATACACCAAGCA

Function

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0033962 P-body assembly biological_process
GO:0000932 P-body cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-121214-350 Predicted to enable RNA binding activity. Predicted to be involved in P-body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to be located in cytoplasm. Predicted to be active in P-body. Orthologous to human PATL2 (PAT1 homolog 2).

Ensembl:

ensembl_id ENSDART00000152483

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010724 lncRNA upstream 678481 12415256 ~ 12415835 (+) True XLOC_004568
TCONS_00009075 lncRNA upstream 1731255 11359201 ~ 11363061 (+) True XLOC_004564
TCONS_00009063 lncRNA upstream 2645485 10448242 ~ 10448831 (+) True XLOC_004558
TCONS_00009058 lncRNA upstream 2926839 10163641 ~ 10167477 (+) True XLOC_004554
TCONS_00010897 lncRNA upstream 3143827 9941133 ~ 9950489 (+) True XLOC_004550
TCONS_00009098 lncRNA downstream 256591 13352261 ~ 13355576 (+) True XLOC_004577
TCONS_00009105 lncRNA downstream 560040 13655710 ~ 13721912 (+) True XLOC_004580
TCONS_00009107 lncRNA downstream 644546 13740216 ~ 13742676 (+) True XLOC_004582
TCONS_00010898 lncRNA downstream 991745 14087415 ~ 14130458 (+) False XLOC_004585
TCONS_00010899 lncRNA downstream 1645482 14741152 ~ 14744702 (+) False XLOC_004589
TCONS_00009078 mRNA upstream 260580 12112384 ~ 12833736 (+) False XLOC_004567
TCONS_00009080 mRNA upstream 299102 12789853 ~ 12795214 (+) True XLOC_004567
TCONS_00009077 mRNA upstream 1330658 11650146 ~ 11763658 (+) True XLOC_004566
TCONS_00009072 mRNA upstream 1723025 11352630 ~ 11371291 (+) False XLOC_004564
TCONS_00009073 mRNA upstream 1723966 11352944 ~ 11370350 (+) False XLOC_004564
TCONS_00009085 mRNA downstream 22870 13118540 ~ 13164249 (+) False XLOC_004571
TCONS_00009086 mRNA downstream 22903 13118573 ~ 13130103 (+) True XLOC_004571
TCONS_00009087 mRNA downstream 69036 13164706 ~ 13176918 (+) True XLOC_004572
TCONS_00009088 mRNA downstream 110285 13205955 ~ 13223449 (+) True XLOC_004573
TCONS_00009089 mRNA downstream 148479 13244149 ~ 13263658 (+) False XLOC_004574
TCONS_00009079 other upstream 480865 12613335 ~ 12613451 (+) True XLOC_004569
TCONS_00009076 other upstream 1450645 11643551 ~ 11643671 (+) True XLOC_004565
TCONS_00009060 other upstream 2883268 10210932 ~ 10211048 (+) True XLOC_004556
TCONS_00009055 other upstream 2948505 10134366 ~ 10145811 (+) False XLOC_004553
TCONS_00009019 other upstream 5361666 7732534 ~ 7732650 (+) True XLOC_004523
TCONS_00009094 other downstream 188104 13283774 ~ 13292767 (+) True XLOC_004575
TCONS_00009101 other downstream 361567 13457237 ~ 13457356 (+) True XLOC_004579
TCONS_00009106 other downstream 562352 13658022 ~ 13658144 (+) True XLOC_004581
TCONS_00009115 other downstream 1006434 14102104 ~ 14103806 (+) True XLOC_004585
TCONS_00009129 other downstream 2286024 15381694 ~ 15381814 (+) True XLOC_004597

Expression Profile

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